PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022964078.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

LBD

Protein Properties

Length: 282aa MW: 31620.4 Da PI: 6.2543

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022964078.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.9	2e-39	18	117	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkC++dC+lapyfp++++++f n+hklFG+sn++k++k+l++ ++e+am+++++++++r dPv G++++i++lq+q++ +kael+ XP_022964078.1 18 ACAACKYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQSDVRSLDPVGGCYRIIRDLQRQIQYSKAELE 112 7*********************************************************************************************9 PP DUF260 96 llkee 100 + ++ XP_022964078.1 113 IVLHQ 117 98776 PP

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence
SKSTSAVSSS SSTATTQACA ACKYQRRKCV PDCILAPYFP HHRQRQFLNA HKLFGVSNIT 60 KIIKNLDPFQ KEEAMRTIIF QSDVRSLDPV GGCYRIIRDL QRQIQYSKAE LEIVLHQLAI 120 CKHQAAASVS AAAILDADHP MSGGYAGIEH QFVEEGFVIG ENENAESLDD EAAEVWGIQA 180 SQISPCSSFK SSVHDFDHVD IHYHHQQFVR FHPDHHQFLH KSEVEAGMVE IDNVILKEDS 240 EPMQNDQDGE VKGAYNLWVF FVCFSELFGS RAVTRSTHVA NS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-48	LBD family protein