PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022963760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 338aa MW: 36921.6 Da PI: 7.7264 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25 | 3.2e-08 | 89 | 113 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ XP_022963760.1 89 FKTKLCCKFRA-GTCPYITNCNFAHS 113 69*********.*************8 PP | |||||||
2 | zf-CCCH | 18.7 | 3e-06 | 163 | 188 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_022963760.1 163 YKGRHCKKFYTEEGCPYGDSCTFLHD 188 78888********************7 PP | |||||||
3 | zf-CCCH | 42.4 | 1.2e-13 | 231 | 256 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_022963760.1 231 WKTRICNKWELTGYCPFGSKCHFAHG 256 8************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence |
MDYSGGNVVH VIPGMSSENW PGEVWATEEE YRAWNNGGGD GSIDTPSNSS YDQRQSQSRS 60 GSEPPNKKSR SSQDVTSSNR SKAIGKMFFK TKLCCKFRAG TCPYITNCNF AHSIEELRRP 120 PHNWQQEIVA AHEEEKVFSE PREEFQIPSL GTSNFGSESQ RSYKGRHCKK FYTEEGCPYG 180 DSCTFLHDEQ SKNRESVAIS LGPGGYSGGG GGGGGGGGGS GNGSNSKPSN WKTRICNKWE 240 LTGYCPFGSK CHFAHGAAET RDSSSAPPDL KQGVLPKAPG DTLVASVPSL PHSDVYHIVV 300 PSQRSTIVIQ RSGQRTHQKW KGPDKISRIY GDWIDDIE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-117 | C3H family protein |