PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022963759.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family C3H
Protein Properties Length: 349aa    MW: 38137.9 Da    PI: 7.5182
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022963759.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.3e-0889113126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC+ f++ GtC+y  +C+FaH+
  XP_022963759.1  89 FKTKLCCKFRA-GTCPYITNCNFAHS 113
                     69*********.*************8 PP

2zf-CCCH18.73.1e-06162187126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     yk + C+ f+    C+yGd+C+F H+
  XP_022963759.1 162 YKGRHCKKFYTEEGCPYGDSCTFLHD 187
                     78888********************7 PP

3zf-CCCH42.31.2e-13230255126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  XP_022963759.1 230 WKTRICNKWELTGYCPFGSKCHFAHG 255
                     8************************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    
MDYSGGNVVH VIPGMSSENW PGEVWATEEE YRAWNNGGGD GSIDTPSNSS YDQRQSQSRS  60
GSEPPNKKSR SSQDVTSSNR SKAIGKMFFK TKLCCKFRAG TCPYITNCNF AHSIEELRRP  120
PHNWQEIVAA HEEEKVFSEP REEFQIPSLG TSNFGSESQR SYKGRHCKKF YTEEGCPYGD  180
SCTFLHDEQS KNRESVAISL GPGGYSGGGG GGGGGGGGSG NGSNSKPSNW KTRICNKWEL  240
TGYCPFGSKC HFAHGAAELH RYGGGLMETE TRDSSSAPPD LKQGVLPKAP GDTLVASVPS  300
LPHSDVYHIV VPSQRSTIVI QRSGQRTHQK WKGPDKISRI YGDWIDDIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-130C3H family protein