PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022963759.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 349aa MW: 38137.9 Da PI: 7.5182 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25 | 3.3e-08 | 89 | 113 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ XP_022963759.1 89 FKTKLCCKFRA-GTCPYITNCNFAHS 113 69*********.*************8 PP | |||||||
2 | zf-CCCH | 18.7 | 3.1e-06 | 162 | 187 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_022963759.1 162 YKGRHCKKFYTEEGCPYGDSCTFLHD 187 78888********************7 PP | |||||||
3 | zf-CCCH | 42.3 | 1.2e-13 | 230 | 255 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_022963759.1 230 WKTRICNKWELTGYCPFGSKCHFAHG 255 8************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence |
MDYSGGNVVH VIPGMSSENW PGEVWATEEE YRAWNNGGGD GSIDTPSNSS YDQRQSQSRS 60 GSEPPNKKSR SSQDVTSSNR SKAIGKMFFK TKLCCKFRAG TCPYITNCNF AHSIEELRRP 120 PHNWQEIVAA HEEEKVFSEP REEFQIPSLG TSNFGSESQR SYKGRHCKKF YTEEGCPYGD 180 SCTFLHDEQS KNRESVAISL GPGGYSGGGG GGGGGGGGSG NGSNSKPSNW KTRICNKWEL 240 TGYCPFGSKC HFAHGAAELH RYGGGLMETE TRDSSSAPPD LKQGVLPKAP GDTLVASVPS 300 LPHSDVYHIV VPSQRSTIVI QRSGQRTHQK WKGPDKISRI YGDWIDDIE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-130 | C3H family protein |