PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022963397.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 640aa MW: 70557.4 Da PI: 7.3399

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022963397.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51	3.6e-16	289	348	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_022963397.1 289 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 348 78*****************988886678446***********************98 PP
2	AP2	32.6	2e-10	408	451	9	55
AP2 9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_022963397.1 408 HHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 451 456777**988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 640 aa Download sequence
MNNVNGNNCN WLGFSVSPNV NMELSSSSAA AASPSVPANL FHSPSQYNYG IYYGVDGEHG 60 GFYSPLSVMP LKSDGSICSM EALSRQHPEA VSSSTPKLED FFGGATMGSH HYESNAREAI 120 ALSLDSIFCH QNPTHEPNNQ PYAHFSSLRS REVMLQDSKV ILPDGCNLQQ QHPTVAENEI 180 SGMKNWAVPR GYAATDNSSF EQKMVSFMSE NGGESGPINA MAYGDLQSLS LSMTMSPSSQ 240 SSCVTATQHV SPAMGDCSAM DSKKRIHEKL DQKQIVHRKS LDTFGQRTSQ YRGVTRHRWT 300 GRYEAHLWDN SCKKEGQSRK GRQVYLGGYD MEEKAARAYD LAALKYWGPS THINFPLENY 360 QKELEEMKNM SRQEYVAHLR RRSSGFSRGA SIYRGVTRSN KSQLKALHHQ HGRWQARIGR 420 VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GMNAVTNFDI TRYDVERIIA SNTLLSGDVA 480 KRKQQPDFNN ESLSESPPTH NSNAEASMPL PSQSSQSESD WKMALYQSSQ QQLIPKPRLL 540 SAITDDGSQL GVEDSAKMMG AHFSNASSMV TSCSLSSSRE ESPDKTSLSM VFGMPQPTSR 600 PFAAPASNMN SSSSWIASAQ QLRAANCMSQ LPVFAGWTDT

Sequence ? help Back to Top

Protein Sequence Length: 640 aa Download sequence

MNNVNGNNCN WLGFSVSPNV NMELSSSSAA AASPSVPANL FHSPSQYNYG IYYGVDGEHG  60
GFYSPLSVMP LKSDGSICSM EALSRQHPEA VSSSTPKLED FFGGATMGSH HYESNAREAI  120
ALSLDSIFCH QNPTHEPNNQ PYAHFSSLRS REVMLQDSKV ILPDGCNLQQ QHPTVAENEI  180
SGMKNWAVPR GYAATDNSSF EQKMVSFMSE NGGESGPINA MAYGDLQSLS LSMTMSPSSQ  240
SSCVTATQHV SPAMGDCSAM DSKKRIHEKL DQKQIVHRKS LDTFGQRTSQ YRGVTRHRWT  300
GRYEAHLWDN SCKKEGQSRK GRQVYLGGYD MEEKAARAYD LAALKYWGPS THINFPLENY  360
QKELEEMKNM SRQEYVAHLR RRSSGFSRGA SIYRGVTRSN KSQLKALHHQ HGRWQARIGR  420
VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GMNAVTNFDI TRYDVERIIA SNTLLSGDVA  480
KRKQQPDFNN ESLSESPPTH NSNAEASMPL PSQSSQSESD WKMALYQSSQ QQLIPKPRLL  540
SAITDDGSQL GVEDSAKMMG AHFSNASSMV TSCSLSSSRE ESPDKTSLSM VFGMPQPTSR  600
PFAAPASNMN SSSSWIASAQ QLRAANCMSQ LPVFAGWTDT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-116	AP2 family protein