PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022963272.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 485aa MW: 51774.6 Da PI: 8.8968

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022963272.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.4e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_022963272.1 61 FVCEICNKGFQRDQNLQLHRRGH 83 89*******************88 PP
2	zf-C2H2	11.6	0.00089	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + XP_022963272.1 137 WKCGKCSKNYAVQSDWKAHSKIC 159 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MPVDFDSSSP ASGEPTVSTP GNPVPPPNSA VRKKRNLPGM PDPEAEVIAL SPKTLLATNR 60 FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKK VYVCPESSCV HHDPSRALGD 120 LTGIKKHFCR KHGEKKWKCG KCSKNYAVQS DWKAHSKICG TREYKCDCGT LFNRRDSFIT 180 HRAFCDVLAE ERAKALLKLV AKPNPEPSPP PPPSPPPPSP PQSSGEPTTV LAVPSQELPE 240 NRLQCIEEAP DMSGTSRSSS SSSSSNGSTR SSRFAGLFAS STTSMSLQPP IPYRDLMQAM 300 ACSDRSPDYA PSSTIEPISL CLAMNQGPQM FGTASQDHRP YLPMPHPAMS ATALLQKAAQ 360 VGAAASNASL LRGLSFVSSS SAAAQQESLA RNHQRRVEPD GVSIAAGLGL GLPCDGNSGL 420 KELIRGNHSM FAPKHTTLDF LGLGMAAGGS PNSGLASLIT SIGGSVDVTT TTPGDISTVD 480 MNTNN

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MPVDFDSSSP ASGEPTVSTP GNPVPPPNSA VRKKRNLPGM PDPEAEVIAL SPKTLLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKK VYVCPESSCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKWKCG KCSKNYAVQS DWKAHSKICG TREYKCDCGT LFNRRDSFIT  180
HRAFCDVLAE ERAKALLKLV AKPNPEPSPP PPPSPPPPSP PQSSGEPTTV LAVPSQELPE  240
NRLQCIEEAP DMSGTSRSSS SSSSSNGSTR SSRFAGLFAS STTSMSLQPP IPYRDLMQAM  300
ACSDRSPDYA PSSTIEPISL CLAMNQGPQM FGTASQDHRP YLPMPHPAMS ATALLQKAAQ  360
VGAAASNASL LRGLSFVSSS SAAAQQESLA RNHQRRVEPD GVSIAAGLGL GLPCDGNSGL  420
KELIRGNHSM FAPKHTTLDF LGLGMAAGGS PNSGLASLIT SIGGSVDVTT TTPGDISTVD  480
MNTNN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-134	C2H2 family protein