PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022963227.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB_related

Protein Properties

Length: 421aa MW: 48013.8 Da PI: 9.0824

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022963227.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.5	4.2e-10	299	346	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lvd+++++G+g+W+ I r++ +Rt+ +++++w+++l XP_022963227.1 299 WTLTEVMQLVDGIAEYGTGRWTHIKRHLFahsPHRTPIDLRDKWRNLL 346 ***************************9999*************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MIMEAEYNDT HVERGFTHDL CAGTNSSRVT PLEGSICDTI LDNRNIHKLV NLSSECKSQG 60 SSRSDTDAFG ISELSAAMIM ETEFNNTHVE RGFTHDLCAG LRTNSSRVTP HEGSICDTIL 120 DNRSIHKFNT NESYIENRDL SDENVKGDIV ASKLVSCSRE RRLRKPTRRF IEEFSDSKSE 180 SNKGRKKTPT KDKYMKGTST EESSHVSHEV QVSTPKSEWH CGTSVPVQSR SQRRHPKKHV 240 PVSGFLSEDV YSATECKNVY SILQGFLSED VYSATECKNV YSSAKRCKKH DRRKHQKMWT 300 LTEVMQLVDG IAEYGTGRWT HIKRHLFAHS PHRTPIDLRD KWRNLLRASC VNIQNRKGIE 360 RKQSHASRPL PKSLLQRVYE LANIYPYPKE RSPKSVEATT PAPDLTESNA LPFNWGRKKD 420 E

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MIMEAEYNDT HVERGFTHDL CAGTNSSRVT PLEGSICDTI LDNRNIHKLV NLSSECKSQG  60
SSRSDTDAFG ISELSAAMIM ETEFNNTHVE RGFTHDLCAG LRTNSSRVTP HEGSICDTIL  120
DNRSIHKFNT NESYIENRDL SDENVKGDIV ASKLVSCSRE RRLRKPTRRF IEEFSDSKSE  180
SNKGRKKTPT KDKYMKGTST EESSHVSHEV QVSTPKSEWH CGTSVPVQSR SQRRHPKKHV  240
PVSGFLSEDV YSATECKNVY SILQGFLSED VYSATECKNV YSSAKRCKKH DRRKHQKMWT  300
LTEVMQLVDG IAEYGTGRWT HIKRHLFAHS PHRTPIDLRD KWRNLLRASC VNIQNRKGIE  360
RKQSHASRPL PKSLLQRVYE LANIYPYPKE RSPKSVEATT PAPDLTESNA LPFNWGRKKD  420
E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	160	166	ERRLRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	2e-25	MYB_related family protein