PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022963154.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 436aa    MW: 48947.1 Da    PI: 5.8332
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022963154.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS313.83.8e-96424332373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal.ppsetseknsseelaalklfsevsPilkfs 94 
                     ++lL++cA+a++s+d++laq++L+ l+++a+pdgd++qRla+ f++AL +r a+  + ++ +a+ ++ ++s +++s +l+ l +f++++P+++f+
  XP_022963154.1  42 ERLLVHCANAIESNDATLAQQILWVLNNIATPDGDSNQRLASAFLRALVTRAANiGSCKILAAItTAATSSLTTHSFSLMDLATFVDLTPWYRFG 136
                     689**************************************************9533355555514444444457777777888*********** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl...vak 184
                     + taN aIl+a+eg ++vH++Df++++++Q p+L++a+a+R e pp l++T+v+ +++    + ++ee+g +L +fA++ +v++ef+++   +++
  XP_022963154.1 137 FTTANAAILDAIEGYSAVHVVDFSLMHCMQIPTLIDAIATRFEFPPLLKLTTVVVKHAPplLELSYEELGAKLVNFARSKNVRMEFRFVescYTD 231
                     ****************************************************9996655889999***********************9888444 PP

            GRAS 185 rledleleeLrvkp.......gEalaVnlvlqlhrll..........desvsles.....erdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                      +++l ++e+rv++       +Eal+ n++++lh+++          +            +r+ +Lk ++sl+P +v++v++ead ++++ + r+
  XP_022963154.1 232 GFSNL-IQEIRVQNliygpesKEALILNCHMMLHYIPeetlnpnpspN------FdmsssTRSMFLKEIRSLEPAIVILVDEEADFTASKMVSRL 319
                     55555.555555555555599****************55555555331......0223346889******************************* PP

            GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                      +a++y +  +ds+++ lpr+s++r ++E+  + r+i+nv+a eg er+er e + +W +r+ ++ F+ v ++++a++++k++l +++  g+ ++
  XP_022963154.1 320 RSAFNYLWIPYDSMDSILPRNSKQREWYEAG-ICRKIENVIAEEGIERVERLEPKTRWVQRMLNSKFRGVGFGDDAVSEVKTMLDEHA-AGWGLK 412
                     *******************************.********************************************************.999*** PP

            GRAS 353 eesgslvlgWkdrpLvsvSaW 373
                     +e++ l+l+Wk++ +v+++aW
  XP_022963154.1 413 KEDDHLLLTWKGHDVVFATAW 433
                     ********************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    
MNNQSPITVP RRRPWPGLFA SSSSSSSKAL GTWLGEDANC MERLLVHCAN AIESNDATLA  60
QQILWVLNNI ATPDGDSNQR LASAFLRALV TRAANIGSCK ILAAITTAAT SSLTTHSFSL  120
MDLATFVDLT PWYRFGFTTA NAAILDAIEG YSAVHVVDFS LMHCMQIPTL IDAIATRFEF  180
PPLLKLTTVV VKHAPPLLEL SYEELGAKLV NFARSKNVRM EFRFVESCYT DGFSNLIQEI  240
RVQNLIYGPE SKEALILNCH MMLHYIPEET LNPNPSPNFD MSSSTRSMFL KEIRSLEPAI  300
VILVDEEADF TASKMVSRLR SAFNYLWIPY DSMDSILPRN SKQREWYEAG ICRKIENVIA  360
EEGIERVERL EPKTRWVQRM LNSKFRGVGF GDDAVSEVKT MLDEHAAGWG LKKEDDHLLL  420
TWKGHDVVFA TAWVPC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-165GRAS family protein