PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022963076.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 376aa MW: 42012.4 Da PI: 5.9893

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022963076.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.8	2.4e-07	153	174	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_022963076.1 153 FCEICGKGFKRDANLRMHMRAH 174 6*******************99 PP
2	zf-C2H2	12.1	0.00058	240	263	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 ++C+ C+ ksFs +Lk+H++ + XP_022963076.1 240 FSCNRCNkKSFSVMADLKSHLKHC 263 89*******************977 PP
3	zf-C2H2	11.3	0.0011	272	287	6	21
TTEEESSHHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHir 21 Cg++Fsrk+ L H+ XP_022963076.1 272 CGTTFSRKDKLFGHMA 287 **************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MNPPTFPMEF SGDPLSTNLT GSDDPRIPLQ NLSTISSRMD AVQIFLSENI DREIRISNQQ 60 MDAVSSEIAS AIQQIVVNGA ALLACAQVKT SNTPDLKAST SRTHSIPVTE KSMAELKVEG 120 VDEITRIESE DFEMDCEIVE MDAMELLAEH IHFCEICGKG FKRDANLRMH MRAHGNQFKT 180 PEALAKPLDG VVVDHKAKRT RFSCPYDGCV RNRTHNKFRP LKSLICVKNH FKRSHCPKMF 240 SCNRCNKKSF SVMADLKSHL KHCGESKWRC SCGTTFSRKD KLFGHMALFE GHMPAVADDD 300 DGKGKATAAT PEMDEDGDSN RISKDVNFPD AWNSPDDGSF ESFLDGFGSI ENHCLQEVLG 360 FPHSFDSESE WKFCSD

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MNPPTFPMEF SGDPLSTNLT GSDDPRIPLQ NLSTISSRMD AVQIFLSENI DREIRISNQQ  60
MDAVSSEIAS AIQQIVVNGA ALLACAQVKT SNTPDLKAST SRTHSIPVTE KSMAELKVEG  120
VDEITRIESE DFEMDCEIVE MDAMELLAEH IHFCEICGKG FKRDANLRMH MRAHGNQFKT  180
PEALAKPLDG VVVDHKAKRT RFSCPYDGCV RNRTHNKFRP LKSLICVKNH FKRSHCPKMF  240
SCNRCNKKSF SVMADLKSHL KHCGESKWRC SCGTTFSRKD KLFGHMALFE GHMPAVADDD  300
DGKGKATAAT PEMDEDGDSN RISKDVNFPD AWNSPDDGSF ESFLDGFGSI ENHCLQEVLG  360
FPHSFDSESE WKFCSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	5e-78	C2H2 family protein