PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022963030.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 507aa MW: 55821.3 Da PI: 6.9331

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022963030.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.5e-17	148	197	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_022963030.1 148 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 197 78*****************......55**********************997 PP
2	AP2	43.8	6.4e-14	240	290	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g XP_022963030.1 240 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 290 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence
MWDLNDCPDE RKEDESEGCW SAKTWIEGEG EEEKGKRVGS VSNSSSSAVL VEDGSDEDAP 60 TPNALLMQIN APSPVTRQFF PLQHPQISSS SSSPSPTTAS TFPQAHWVGV KFGHPDPFAA 120 PAPPNSIKST EISQPIKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT 180 AHAAARAYDR AAIKFRGVEA DINFSIEDYE EDLKQMGNLT KEEFVHVLRR QSTGFPRGSS 240 KYRGVTLHKC GRWEARMGQF LGKKYVYLGL FDTEIEAARA YDKAAIKCNG KEAVTNFDPS 300 IYQNELNPIS DSTANLGDHS LDLSLGNSSS NQNDTPKPSI DPHHSSSSSA PLSMEDDWQR 360 TQGFRRPQLN LVEESSGAGG NKHLKAAEGR NNRYLESETM QRLSQTHIQS PASFEMQRHA 420 QFSRQVAGGD HNHNHNPTLN YQFGGSSNGG GGRIGSDLSL SLNDHNQVVD YSGPSQALAT 480 AAASSGFAPP SKNWLHNNGF HCLMRPS

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence

MWDLNDCPDE RKEDESEGCW SAKTWIEGEG EEEKGKRVGS VSNSSSSAVL VEDGSDEDAP  60
TPNALLMQIN APSPVTRQFF PLQHPQISSS SSSPSPTTAS TFPQAHWVGV KFGHPDPFAA  120
PAPPNSIKST EISQPIKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT  180
AHAAARAYDR AAIKFRGVEA DINFSIEDYE EDLKQMGNLT KEEFVHVLRR QSTGFPRGSS  240
KYRGVTLHKC GRWEARMGQF LGKKYVYLGL FDTEIEAARA YDKAAIKCNG KEAVTNFDPS  300
IYQNELNPIS DSTANLGDHS LDLSLGNSSS NQNDTPKPSI DPHHSSSSSA PLSMEDDWQR  360
TQGFRRPQLN LVEESSGAGG NKHLKAAEGR NNRYLESETM QRLSQTHIQS PASFEMQRHA  420
QFSRQVAGGD HNHNHNPTLN YQFGGSSNGG GGRIGSDLSL SLNDHNQVVD YSGPSQALAT  480
AAASSGFAPP SKNWLHNNGF HCLMRPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-110	AP2 family protein