PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022962702.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 859aa MW: 95581.6 Da PI: 8.7244 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.7 | 3.7e-07 | 280 | 299 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ GtC+ G +Ck++H XP_022962702.1 280 ICNFFAA-GTCRNGKNCKYSH 299 8**9999.************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 859 aa Download sequence |
MSGSGRKRSS KWDLREESRP GWISPELASD DGSKRSGMET TNTVSKSKKD WGLLSKEPLS 60 ETRDSHKEDY TNKGYNKNME GTAEWDADKS YSTRMSPGLD GWRRHSSNPS DRNDWSRGRS 120 RSRSWSRSRS RSRTPPRSFK RDSGFHDRNR NRTRVSTQLC RDFASGRCRR GGGCPFLHAE 180 NQNLDDSWES RNKKGGRSLR STPHDFRDYS RSGRSAAPCT DFVKGRCHRG ESCKYPHDSG 240 FHELSRGSSN DISRDRENDR SKEAYLSRGE REPSSSSLVI CNFFAAGTCR NGKNCKYSHQ 300 SQPCASLERK SSADRWEQVE CSDGRERLWD GSKSNELASG SDFTQLREEK NKQIASQESR 360 YTWPSELKGG HSLNNESKIQ WDQAASIKTV QNSKNDTILS KPEDAGGCIG TSDSRGHRKW 420 PSDDMEMSPD WHFPVQPSNH VVKGDCNIIL DSGSQTSMAL ATLSHAIVQE ALAKKQDVTI 480 EPLTVDNTHF RQNHNLTKDV TMASAFNDKI TIDKTIASHA EGNPSGNIVL GQKMAYHTDH 540 PGGSVMNPNV ADGIFRVKPR EDDRSMPGIN PVTTITPNMV TSEQITQLTN LSVSLAQYFG 600 NVQPLPQLYA SLSAHNVSEI PSFPYTDAPV GALGTLMKTS PIIECSKQHD STVCNSLEVK 660 KLEATKIPSD SLLNFIGQKS MTDAKDEVQL PIFPLSSDPS NKIVISAKET PNESDAINHG 720 KRAAEGEANN KKNGDGDNEN RTEAGANEDS EENDTTENAN GNDGVHDKKK GKDTKGIRAF 780 KFALVEFVKE LLKPTWKEGH ISKDVYKTIV KKVVDKVTGT LQGGHIPQTQ EKIDQYLSFS 840 KSKLTKLVQA YVDRVQKTS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 4e-11 | C3H family protein |