PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022962527.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 376aa MW: 40883.5 Da PI: 4.9874

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022962527.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.9	2.7e-16	200	246	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq XP_022962527.1 200 VHNMSEKRRRRRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 246 6***********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MADLYGTSPS SDVVALPHDP EGFSSFINPH LQTNTSSASS PSFVSFKNKF TPLLHSQPPW 60 HSSSLFSRRP ESTSVAGVSC MLDSPEDWLQ SSRALNHALS DCSVRDVRFS DAPFLAMNST 120 CGGVKLSDPG DFVKESSDNA FSSSGAVDSD TNAPLKRRDL SSENDPGDFS CDSEGADVPE 180 VPFGTDLPRS SSKRSRSAEV HNMSEKRRRR RINEKMKALQ NLIPNSNKTD KASMLDEAIE 240 YLKQLQLQVQ MLSMRNGLSL LPVCLPGKLQ PIQLPQMGLD LDVGNAFLMS RRGIDTSFTG 300 NEGRPMQSTF NLSNKCNLSD QSIAIPSAPN TTTSEMAFGF EPTIQAYGGE FELSSDFKDV 360 QAAVQLDCAR TGKDSS

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MADLYGTSPS SDVVALPHDP EGFSSFINPH LQTNTSSASS PSFVSFKNKF TPLLHSQPPW  60
HSSSLFSRRP ESTSVAGVSC MLDSPEDWLQ SSRALNHALS DCSVRDVRFS DAPFLAMNST  120
CGGVKLSDPG DFVKESSDNA FSSSGAVDSD TNAPLKRRDL SSENDPGDFS CDSEGADVPE  180
VPFGTDLPRS SSKRSRSAEV HNMSEKRRRR RINEKMKALQ NLIPNSNKTD KASMLDEAIE  240
YLKQLQLQVQ MLSMRNGLSL LPVCLPGKLQ PIQLPQMGLD LDVGNAFLMS RRGIDTSFTG  300
NEGRPMQSTF NLSNKCNLSD QSIAIPSAPN TTTSEMAFGF EPTIQAYGGE FELSSDFKDV  360
QAAVQLDCAR TGKDSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	206	211	KRRRRR
2	206	212	KRRRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	4e-41	bHLH family protein