PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022961279.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 301aa MW: 32197.4 Da PI: 9.4702 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.1 | 3.2e-08 | 101 | 126 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f C++Gd+C+FaHg+ XP_022961279.1 101 KTRLCNKFNSAEGCRFGDKCHFAHGE 126 8***********************96 PP | |||||||
2 | zf-CCCH | 30.6 | 5.8e-10 | 268 | 293 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +fa+ GtC + +rC+FaHg+ XP_022961279.1 268 FKTKLCANFAK-GTCTFRERCHFAHGE 293 69*********.*************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence |
MDIDAVRKRE RTETALNGNG SFKKFKPEMD SLSTGLGSKS RPCTKFFSTS GCPFGEGCHF 60 AHYVPGGFKA ISQMITPALP PGNRNPVPQS FQDGVSPPAV KTRLCNKFNS AEGCRFGDKC 120 HFAHGEWELG RPNPPQDHGG MGQMQQPRMG GGWNVPPPPP NHGPAASFGA SATAKISVDA 180 SLAGPIIGKN GVNSKNICRM TGARLSIKEH ESDPSLKNIE LEGTFDQINL ASSMVRELIA 240 NVGAASANNA MKQHHSATQQ SSGSANNFKT KLCANFAKGT CTFRERCHFA HGESELRKPG 300 M |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 2e-77 | C3H family protein |