PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022960954.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 1025aa MW: 114862 Da PI: 4.8476

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022960954.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43	1e-13	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l XP_022960954.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	32.7	1.7e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l XP_022960954.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1025 aa Download sequence
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDTRHR KRKRKGIDYN AEIPFEKRPP PGFFDVSGED RPVEQPKFPA 240 TIEELEGKRR IDVEAQLRKQ DIAKNKIAQR QDAPSAVLQA NKLNDPEMVR KRSKLMLPAP 300 QISDHELEEI AKMGYAGDLL AGSEELAEGS GATRALLANY AQTSRQGMTP FRTPQRTPAG 360 KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP RKKEIQTPNP MLTPSATPGG 420 VGLTPRSGMT PARDAYSFGM TPKGTPIRDE LHINEDMDAH DSAKLESQRQ ADLRRNLSLG 480 LGNLPQPKNE YQVVMQPIPE DKEEPEETIE EDMSDRIARE RAEEEARQQA LLRKRSKVLQ 540 RELPRPPTAS LELIRNSLIA DGDKSSFVPP TPIEQADEMV RKELLALLEH DNAKYPIDEK 600 VNKEKKKGSK RSGNRPTAAI PTIDDFEVTE MEEADYLINE EARYLCVAMG HEKESLDEFV 660 EAHKTCLNDL MYFPTRNAYG LSSVAGNHEK LAALQDEFEY VKMKMDDDTE KAVRLEKKVK 720 VLTHGYETRS KQSLWPQIEA TFKQIDTAAT ELECFVALQK QEMSAASHRI SGISEEVQKQ 780 KELERTLQLR YGNLLADLEK IQKIMDDRKA LAQKEEEIAA ESRALQLAEA EANQSVGEKA 840 DNSYESMSAS ATVNCENSMP VTSAPNELTG EQLNLSVRHE HGTSNAMDID AEKESAAVSS 900 DIGLTDDKLP SAVEENASLP DNGFEDSDKS RTIDAPSQEL LGPHANGSPD SITVENKISN 960 DSVDREAIQN VECSTNNVEE VEDVETQQLN TEAENSEFHL TNLDSSAAPA SSNEDGPRNE 1020 GEATE

Sequence ? help Back to Top

Protein Sequence Length: 1025 aa Download sequence

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDTRHR KRKRKGIDYN AEIPFEKRPP PGFFDVSGED RPVEQPKFPA  240
TIEELEGKRR IDVEAQLRKQ DIAKNKIAQR QDAPSAVLQA NKLNDPEMVR KRSKLMLPAP  300
QISDHELEEI AKMGYAGDLL AGSEELAEGS GATRALLANY AQTSRQGMTP FRTPQRTPAG  360
KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP RKKEIQTPNP MLTPSATPGG  420
VGLTPRSGMT PARDAYSFGM TPKGTPIRDE LHINEDMDAH DSAKLESQRQ ADLRRNLSLG  480
LGNLPQPKNE YQVVMQPIPE DKEEPEETIE EDMSDRIARE RAEEEARQQA LLRKRSKVLQ  540
RELPRPPTAS LELIRNSLIA DGDKSSFVPP TPIEQADEMV RKELLALLEH DNAKYPIDEK  600
VNKEKKKGSK RSGNRPTAAI PTIDDFEVTE MEEADYLINE EARYLCVAMG HEKESLDEFV  660
EAHKTCLNDL MYFPTRNAYG LSSVAGNHEK LAALQDEFEY VKMKMDDDTE KAVRLEKKVK  720
VLTHGYETRS KQSLWPQIEA TFKQIDTAAT ELECFVALQK QEMSAASHRI SGISEEVQKQ  780
KELERTLQLR YGNLLADLEK IQKIMDDRKA LAQKEEEIAA ESRALQLAEA EANQSVGEKA  840
DNSYESMSAS ATVNCENSMP VTSAPNELTG EQLNLSVRHE HGTSNAMDID AEKESAAVSS  900
DIGLTDDKLP SAVEENASLP DNGFEDSDKS RTIDAPSQEL LGPHANGSPD SITVENKISN  960
DSVDREAIQN VECSTNNVEE VEDVETQQLN TEAENSEFHL TNLDSSAAPA SSNEDGPRNE  1020
GEATE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	205	KRRELKAAGIDTRHRKRKRK
2	200	205	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein