PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022960842.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family HRT-like
Protein Properties Length: 479aa    MW: 53465.8 Da    PI: 9.9445
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022960842.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like50.24.2e-16268297231
        HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     CGv ++ G vC+++Pv+gRKRC+eHKGm++
  XP_022960842.1 268 CGVVIGYGVVCRKPPVEGRKRCAEHKGMKV 297
                     ****************************97 PP

2HRT-like63.72.6e-20342372131
        HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     iCGv l dGs+C+r+Pv+gRKRCeeHKG+Ri
  XP_022960842.1 342 ICGVVLYDGSPCRRTPVQGRKRCEEHKGQRI 372
                     8*****************************7 PP

3HRT-like54.81.6e-17431460231
        HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                     CGv l+dG  C+rqPvkgR RC eHKGmRi
  XP_022960842.1 431 CGVDLGDGLYCTRQPVKGRVRCGEHKGMRI 460
                     *****************************7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    
MVAEFSSTRL KREDCKRTKH DSNFSKWEIL VAPSDWEDYS SGKEGAERYR IHNLPKVSGP  60
GLYELGIAVS SSGLGREIAK LDADWIVVVY LGEADNVRTR LQHYGRSGSH LGNGYLCFVG  120
CKVVPLEKGP GLFQEMFTRG YSIVYRWAPM KNKRDAQMTE AQLLKTFDYA WNTSGNGARR  180
HNDVLKKLED IASQTKKFTI IARKLLPFRQ KQLGIKIKTS KRIPTENKPG EYGEESSSFF  240
SRILHFSRSR PRLVVNTDDV SGADSSSCGV VIGYGVVCRK PPVEGRKRCA EHKGMKVNGL  300
LKNSSTIYGD TDFSGSNAET SYNTEELSVQ DSFPNKGNFL PICGVVLYDG SPCRRTPVQG  360
RKRCEEHKGQ RIRRPTLISS QEAKPKVDLP SQDNLASLKY KQQTSPTSTQ ESILIAQDNS  420
PDLNSSLERK CGVDLGDGLY CTRQPVKGRV RCGEHKGMRI KGLISRLATV SDAISVRKH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.11e-107HRT-like family protein