PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022960842.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | HRT-like | ||||||||
Protein Properties | Length: 479aa MW: 53465.8 Da PI: 9.9445 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 50.2 | 4.2e-16 | 268 | 297 | 2 | 31 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv ++ G vC+++Pv+gRKRC+eHKGm++ XP_022960842.1 268 CGVVIGYGVVCRKPPVEGRKRCAEHKGMKV 297 ****************************97 PP | |||||||
2 | HRT-like | 63.7 | 2.6e-20 | 342 | 372 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv l dGs+C+r+Pv+gRKRCeeHKG+Ri XP_022960842.1 342 ICGVVLYDGSPCRRTPVQGRKRCEEHKGQRI 372 8*****************************7 PP | |||||||
3 | HRT-like | 54.8 | 1.6e-17 | 431 | 460 | 2 | 31 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv l+dG C+rqPvkgR RC eHKGmRi XP_022960842.1 431 CGVDLGDGLYCTRQPVKGRVRCGEHKGMRI 460 *****************************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence |
MVAEFSSTRL KREDCKRTKH DSNFSKWEIL VAPSDWEDYS SGKEGAERYR IHNLPKVSGP 60 GLYELGIAVS SSGLGREIAK LDADWIVVVY LGEADNVRTR LQHYGRSGSH LGNGYLCFVG 120 CKVVPLEKGP GLFQEMFTRG YSIVYRWAPM KNKRDAQMTE AQLLKTFDYA WNTSGNGARR 180 HNDVLKKLED IASQTKKFTI IARKLLPFRQ KQLGIKIKTS KRIPTENKPG EYGEESSSFF 240 SRILHFSRSR PRLVVNTDDV SGADSSSCGV VIGYGVVCRK PPVEGRKRCA EHKGMKVNGL 300 LKNSSTIYGD TDFSGSNAET SYNTEELSVQ DSFPNKGNFL PICGVVLYDG SPCRRTPVQG 360 RKRCEEHKGQ RIRRPTLISS QEAKPKVDLP SQDNLASLKY KQQTSPTSTQ ESILIAQDNS 420 PDLNSSLERK CGVDLGDGLY CTRQPVKGRV RCGEHKGMRI KGLISRLATV SDAISVRKH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 1e-107 | HRT-like family protein |