PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022960833.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | YABBY | ||||||||
Protein Properties | Length: 181aa MW: 20280.7 Da PI: 6.7207 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 207.6 | 4.5e-64 | 7 | 168 | 5 | 168 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q+l+ ++ + + + + + ++ s +++ +s++ +++ XP_022960833.1 7 IAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQALSWQDV-QVPNYNLYSCNGPDFQGDFGSSSSSS--SSSKCENN 98 579**************************************************99995.44333333333334444555544444..44444555 PP YABBY 100 klsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 k++ + + + v+rPPek+qrvPsayn+fikeeiqrika+nP+ishreafs+aaknWah+P+i f XP_022960833.1 99 KMEIRANTTMGTEERvVNRPPEKKQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHYPRIPF 168 56555555555544449**************************************************976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence |
MASCLDIAPE QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQALS 60 WQDVQVPNYN LYSCNGPDFQ GDFGSSSSSS SSSKCENNKM EIRANTTMGT EERVVNRPPE 120 KKQRVPSAYN QFIKEEIQRI KANNPEISHR EAFSTAAKNW AHYPRIPFWS DVGNQQSNEA 180 R |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.1 | 2e-73 | YABBY family protein |