PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022960780.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 404aa MW: 43985.6 Da PI: 7.7368

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022960780.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.7	1.4e-11	48	74	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_022960780.1 48 PGEPDCSYYIRTGLCRFGATCRFNHPP 74 5789*********************97 PP
2	zf-CCCH	39	1.4e-12	95	119	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_022960780.1 95 QPECQYYLKTGTCKFGATCKFHHPR 119 799********************96 PP
3	zf-CCCH	34.9	2.6e-11	141	165	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++ rtG+Ck+G++CkF+H++ XP_022960780.1 141 EPECAYYIRTGQCKFGNTCKFHHPQ 165 799********************97 PP
4	zf-CCCH	38	2.7e-12	259	285	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_022960780.1 259 PGQPECQFYMKTGDCKFGAVCRFHHPR 285 5789*********************96 PP
5	zf-CCCH	40.3	5.3e-13	305	331	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_022960780.1 305 PGEPLCIFYSRYGICKFGPSCKFDHPM 331 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MEYDSGIPMS VTEGHSSALT PSLREDALWQ MNLGSGEIMG SGSYPVRPGE PDCSYYIRTG 60 LCRFGATCRF NHPPNRELAI ATARMKGEFP ERIGQPECQY YLKTGTCKFG ATCKFHHPRD 120 KAGIAGRVAL NIIGYPLRPS EPECAYYIRT GQCKFGNTCK FHHPQPTNMM VSLRGSPIYP 180 TVQSPTPGQQ SYPGGSTNWS RASFIPSPRW EGPSSYASLI LPQGVLSVPG WNAFNDQLGS 240 VSSSESPQQT RENVFPERPG QPECQFYMKT GDCKFGAVCR FHHPRERVLP APDCVLSPIG 300 LPLRPGEPLC IFYSRYGICK FGPSCKFDHP MGIFTYNLSA AAAAAAASSA NAPVQHLFGT 360 SSGSTALNLS SEGLVEAGSA KPRRLSISET REMPSDDENI DTEG

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MEYDSGIPMS VTEGHSSALT PSLREDALWQ MNLGSGEIMG SGSYPVRPGE PDCSYYIRTG  60
LCRFGATCRF NHPPNRELAI ATARMKGEFP ERIGQPECQY YLKTGTCKFG ATCKFHHPRD  120
KAGIAGRVAL NIIGYPLRPS EPECAYYIRT GQCKFGNTCK FHHPQPTNMM VSLRGSPIYP  180
TVQSPTPGQQ SYPGGSTNWS RASFIPSPRW EGPSSYASLI LPQGVLSVPG WNAFNDQLGS  240
VSSSESPQQT RENVFPERPG QPECQFYMKT GDCKFGAVCR FHHPRERVLP APDCVLSPIG  300
LPLRPGEPLC IFYSRYGICK FGPSCKFDHP MGIFTYNLSA AAAAAAASSA NAPVQHLFGT  360
SSGSTALNLS SEGLVEAGSA KPRRLSISET REMPSDDENI DTEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-179	C3H family protein