PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022960779.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family C3H
Protein Properties Length: 410aa    MW: 44575.3 Da    PI: 7.7368
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022960779.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.4e-115480127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+++ rtG C++G++C+F+H+p
  XP_022960779.1 54 PGEPDCSYYIRTGLCRFGATCRFNHPP 80
                    5789*********************97 PP

2zf-CCCH38.91.4e-12101125327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tGtCk+G++CkF+H++
  XP_022960779.1 101 QPECQYYLKTGTCKFGATCKFHHPR 125
                     799********************96 PP

3zf-CCCH34.92.6e-11147171327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C ++ rtG+Ck+G++CkF+H++
  XP_022960779.1 147 EPECAYYIRTGQCKFGNTCKFHHPQ 171
                     799********************97 PP

4zf-CCCH382.8e-12265291127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+f+++tG Ck+G+ C+F+H++
  XP_022960779.1 265 PGQPECQFYMKTGDCKFGAVCRFHHPR 291
                     5789*********************96 PP

5zf-CCCH40.35.4e-13311337127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC f++r+G+Ck+G++CkF H++
  XP_022960779.1 311 PGEPLCIFYSRYGICKFGPSCKFDHPM 337
                     589**********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    
MEYDSGIPMS VTEGHSSALT PSLREGSLAN FDALWQMNLG SGEIMGSGSY PVRPGEPDCS  60
YYIRTGLCRF GATCRFNHPP NRELAIATAR MKGEFPERIG QPECQYYLKT GTCKFGATCK  120
FHHPRDKAGI AGRVALNIIG YPLRPSEPEC AYYIRTGQCK FGNTCKFHHP QPTNMMVSLR  180
GSPIYPTVQS PTPGQQSYPG GSTNWSRASF IPSPRWEGPS SYASLILPQG VLSVPGWNAF  240
NDQLGSVSSS ESPQQTRENV FPERPGQPEC QFYMKTGDCK FGAVCRFHHP RERVLPAPDC  300
VLSPIGLPLR PGEPLCIFYS RYGICKFGPS CKFDHPMGIF TYNLSAAAAA AAASSANAPV  360
QHLFGTSSGS TALNLSSEGL VEAGSAKPRR LSISETREMP SDDENIDTEG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-178C3H family protein