PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022960636.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 474aa    MW: 53564.8 Da    PI: 6.3474
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022960636.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS459.32.3e-140464611374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++ Ll+cA++v+ g l  a+ +L ++s+las dgd+mqR+aayf+eALa r+++++++lyka+++++ +   +see+ + klf+e++P+lk+++
  XP_022960636.1  46 LIHFLLTCANHVAVGRLDSANLALDQISHLASADGDTMQRIAAYFAEALADRVLKTWPGLYKAFNSTKIP--MVSEEILVKKLFFEMFPFLKVAF 138
                     6899************************************************************999998..69********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaI+ea+ege+++HiiD++ ++ +QW+aL+q L++Rpegpp+lRiTgv++    +ke l +++ rL+++Ae+l++pf+fn  v ++ledl+
  XP_022960636.1 139 VLTNQAIVEAMEGEKMIHIIDLNGNETAQWLALMQVLSARPEGPPHLRITGVHP----QKEILDQMAPRLTEVAEKLDIPFQFNS-VISQLEDLD 228
                     ******************************************************....9**************************.799****** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll.................................................desvsleserdevLklvkslsP 236
                     +e+Lrvk+gEala+n+vlqlh+ll                                                 + s+s + +++++L+ ++sl P
  XP_022960636.1 229 IEKLRVKTGEALAINSVLQLHTLLgsdevlqkpsssaaksanvvqysryslselldkdlvhrcspspdsvsssALSQSNATKINRFLDGLWSLTP 323
                     **********************************************************************97744444444679*********** PP

            GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331
                     kv+vv+eq+++hn+++++er+leal++y+a+fd+le++++r+s er k+E++l+g+ei+n++aceg er+erhe+ ekW +r++ aGF+ v+ls+
  XP_022960636.1 324 KVMVVTEQDCNHNGSTLMERLLEALHTYAAIFDCLESNMSRTSVERLKLEKMLFGEEIKNIIACEGVERKERHEKHEKWCQRFHIAGFRHVSLSY 418
                     *********************************************************************************************** PP

            GRAS 332 kaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + + qa++ll+ ++ dgyr++ee+g+++++W+drpL++vSaWr
  XP_022960636.1 419 YGMLQAHSLLQGYGCDGYRMKEENGCVMICWQDRPLFTVSAWR 461
                     ******************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    
MIQDEGISTI TSTPLQFFTM MPLSPKLGSP YLWLRELKSE ERGLYLIHFL LTCANHVAVG  60
RLDSANLALD QISHLASADG DTMQRIAAYF AEALADRVLK TWPGLYKAFN STKIPMVSEE  120
ILVKKLFFEM FPFLKVAFVL TNQAIVEAME GEKMIHIIDL NGNETAQWLA LMQVLSARPE  180
GPPHLRITGV HPQKEILDQM APRLTEVAEK LDIPFQFNSV ISQLEDLDIE KLRVKTGEAL  240
AINSVLQLHT LLGSDEVLQK PSSSAAKSAN VVQYSRYSLS ELLDKDLVHR CSPSPDSVSS  300
SALSQSNATK INRFLDGLWS LTPKVMVVTE QDCNHNGSTL MERLLEALHT YAAIFDCLES  360
NMSRTSVERL KLEKMLFGEE IKNIIACEGV ERKERHEKHE KWCQRFHIAG FRHVSLSYYG  420
MLQAHSLLQG YGCDGYRMKE ENGCVMICWQ DRPLFTVSAW RCCNRMNIET AFSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein