PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022959901.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family C3H
Protein Properties Length: 405aa    MW: 45597.4 Da    PI: 6.2546
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022959901.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13.1e-083454526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     C ++++ G C +G+rC++ H+
  XP_022959901.1 34 VCTYYQK-GRCAFGSRCRYDHV 54
                    6******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    
MVLWVLCKYF AHGACLKGEY CEFSHDWTAP PSNVCTYYQK GRCAFGSRCR YDHVKVSHAE  60
SSASSNSQQP HVSESVSIAH TLLSSPLSPS PGSTIELAGS RISCLPSHVE SAWSVECELP  120
SGLDDWGSRE TRIISPADLP ICSFSAAGTN CPRGDNCPHI HGDLCPTCGK QCLHPFRTDE  180
REEHMKACEK KQKHLESLKH SQEIECSVCL ERVLSKTEIA ERKFGLLSEC DHPFCISCIR  240
NWRNSSSTSG MDVNSALRAC PICRKLSYFV IPSVIWYSSK EEKQEIVDSY KSKLRSIDCK  300
HFNFGNGNCP FGSSCFYKHL VKPGSYTWKY HRPPPPRPRS QRTPPSRSNI VDMDAFFDMF  360
EDLEDLDFSA EDLDFEDLTP LEMAFVLMQL GCEANLSSDE ENYSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.11e-133C3H family protein