PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022959701.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 520aa    MW: 58313.7 Da    PI: 6.0173
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022959701.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS309.76.7e-951555131374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     l++lL+ec  a+s ++l +a+++L +l ++asp+g ++ +R+++yf+ A+++r+ +s  ++++ l          ++  +++++f++vsP++kf+
  XP_022959701.1 155 LISLLFECSVAISVDNLVEAHRMLLELTQMASPYGqSSAERVVTYFAAAMSSRVINSILGICSPLLD-------YKSISNSFQIFNNVSPLIKFA 242
                     5799*******************************889******************77777754432.......345567899************ PP

            GRAS  95 hltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     hl+ Nq+Ile+++++ + +HiiD+di+qG+QWp+L+qaL+++   + + ++RiT++g       e l  tg++L+++A++lg++fe+n+ +a+++
  XP_022959701.1 243 HLASNQTILESLSQCvDPIHIIDLDIMQGMQWPPLFQALTTKMddSCSRHVRITAMGT----TMELLLDTGKQLSNIARQLGLSFEYNP-IATKV 332
                     ***************9**************************9555578*********....99*************************.79*** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      ++++++ ++++gE+++Vn+v   h l+d ++s  +    +L l+++l Pkv+++veq++ h ++s+l+rf+++l+yysa+fdsl a l++++++
  XP_022959701.1 333 GKVDISMVKLRQGEMVVVNWVQ--HCLYDATGSDWK----TLGLIQQLGPKVFTFVEQDMCH-GGSYLDRFVSSLHYYSAIFDSLGACLSSNDSN 420
                     *********************9..889988888888....********************99.779***************************** PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                     r+ vE+ +l rei n++a  g++r   +e+l++Wr+ l+++ + +vp+s + ++qa l+l++ + ++g+++ + +g ++ l Wkd +L+++S+W+
  XP_022959701.1 421 RNQVEHNILYREINNILAIGGSSR-SGEEKLKEWRSELRKC-LMEVPMSANSMAQAWLMLNMQSnNQGFSLVQGEGGALkLRWKDTSLYTASSWT 513
                     **********************95.56678*********99.678*******************9****99877666666**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    
MAWFLPAIFL RSDHKIKKKL KMQKTKLLCL PLKWLPCSFI TNLSHPYIFF LSPYPQSFAF  60
PMKLGRPEVD NGCLLQPPDP DEPWDFELPS SSTSNTPIFH NQAFNLQSSN EFAYSVDHVN  120
DLLESSTDDT TNGDELQVHV GNERSKDVDD HGLTLISLLF ECSVAISVDN LVEAHRMLLE  180
LTQMASPYGQ SSAERVVTYF AAAMSSRVIN SILGICSPLL DYKSISNSFQ IFNNVSPLIK  240
FAHLASNQTI LESLSQCVDP IHIIDLDIMQ GMQWPPLFQA LTTKMDDSCS RHVRITAMGT  300
TMELLLDTGK QLSNIARQLG LSFEYNPIAT KVGKVDISMV KLRQGEMVVV NWVQHCLYDA  360
TGSDWKTLGL IQQLGPKVFT FVEQDMCHGG SYLDRFVSSL HYYSAIFDSL GACLSSNDSN  420
RNQVEHNILY REINNILAIG GSSRSGEEKL KEWRSELRKC LMEVPMSANS MAQAWLMLNM  480
QSNNQGFSLV QGEGGALKLR WKDTSLYTAS SWTRCNVGVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-117GRAS family protein