PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022959619.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 485aa MW: 53166.4 Da PI: 8.911

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022959619.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.4e-05	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_022959619.1 59 FVCEICNKGFQRDQNLQLHRRGH 81 89*******************88 PP
2	zf-C2H2	13.8	0.00017	135	157	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ XP_022959619.1 135 WKCEKCSKVYAVQSDWKAHSKTC 157 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MFATTMSNST SLSEEATVSL NSLLPPQKIK KKRSLPGNPD PDAEVIALSP RTLLATNRFV 60 CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NSKEVKKKAY VCPEPSCVHH HPSRALGDLT 120 GIKKHYCRKH GEKKWKCEKC SKVYAVQSDW KAHSKTCGTR EYRCDCGTLF SRKDSFITHR 180 AFCDALAEES ARLSANQFVV AAEVEAVAEG GAATSTASAS AQSLFPFGNL NQFPSSSLSR 240 PPQTYMSLNP WDNPQNPNPN QTHQIIKPED SHSHHFHQIP TLPLAGSSPS TATNNPFGII 300 QDHHRRHHPH HHQKAGSSSS SSMIASPFRN LHVSVNPAMS AHLSATALLQ KAATVGVGAV 360 KSSQHQPESV GHMTHFNMPD IPEFAAPTHM DSLTHQLGPD YATWQKTDRL TRDFLGLTGD 420 GNGGGGGSGA MQVSMSVKDM LTYAGGLEIF KPHNNNNNNN NNNSNNNNHS AFGFAEPAAN 480 ETWDC

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MFATTMSNST SLSEEATVSL NSLLPPQKIK KKRSLPGNPD PDAEVIALSP RTLLATNRFV  60
CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NSKEVKKKAY VCPEPSCVHH HPSRALGDLT  120
GIKKHYCRKH GEKKWKCEKC SKVYAVQSDW KAHSKTCGTR EYRCDCGTLF SRKDSFITHR  180
AFCDALAEES ARLSANQFVV AAEVEAVAEG GAATSTASAS AQSLFPFGNL NQFPSSSLSR  240
PPQTYMSLNP WDNPQNPNPN QTHQIIKPED SHSHHFHQIP TLPLAGSSPS TATNNPFGII  300
QDHHRRHHPH HHQKAGSSSS SSMIASPFRN LHVSVNPAMS AHLSATALLQ KAATVGVGAV  360
KSSQHQPESV GHMTHFNMPD IPEFAAPTHM DSLTHQLGPD YATWQKTDRL TRDFLGLTGD  420
GNGGGGGSGA MQVSMSVKDM LTYAGGLEIF KPHNNNNNNN NNNSNNNNHS AFGFAEPAAN  480
ETWDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-113	C2H2 family protein