PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022959156.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 723aa    MW: 78431.3 Da    PI: 6.3585
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022959156.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS321.81.4e-983747223374
            GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++L++++e +++g+  laq +Larl+++ +sp g+p+qR+a+yf+eAL++ l++         +ps+ s+ + + ++aa+k fsevsP+l+f+++
  XP_022959156.1 374 DQLFKAVELIETGNSVLAQGILARLNHQlSSPIGKPFQRAAFYFKEALQSLLQN-------PSNPSKPSPLSIIFKIAAYKSFSEVSPVLQFANF 461
                     79************************998************************9.......45666666677*********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.e 190
                     t Nqa+lea++g+ r+HiiDfdi++G+QW++L+q+La R  gpp l+iT+++s ++++  el  t+e+L++fA+ l++ fe +++  ++l++   
  XP_022959156.1 462 TSNQALLEAFNGSGRIHIIDFDIGYGGQWASLMQELALR--GPPFLKITAFASTSTHDDFELGFTQENLKNFANDLNIGFELEIINIESLNSGsW 554
                     **************************************9..9*************99***************************97777766524 PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     + +L+v+++Ea+aVnl +   +l+            +L+++k+l+Pk+vv v++ +++ +++F +r+++ l+ ysal++s+ea    + +++ k+
  XP_022959156.1 555 PLALNVSENEAIAVNLPVGSLSLP-----------MILRFIKHLNPKIVVSVDRGCSRVDAPFPHRVIHGLHSYSALLESMEAV-TVNMDAQLKI 637
                     67889999**********887776...........59********************************************776.46789***** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     Er l+++ i++vv+ ++      +e+l   ++++ ++GF+p+++s+++++qa++ll++++++g+++++++ slvl+W++++Lvs+SaWr
  XP_022959156.1 638 ERYLVQPCIEKVVTSSQCL----NERLPPLKSMFLSSGFSPLTFSNFTESQAECLLQRTPVQGFHIDKRHSSLVLCWHRKELVSISAWR 722
                     **************99998....9999999**********************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    
MKAMPFPYPF DDLRPNGVLN FSSVSDSSPP PFRRHNHRQH WSSTDNTNLL KQICYVGAAE  60
PTSVLDTRRS PSPPTSTSTL SSSLGGGGGG GGTASTDTTV AAPQSSLPEN PSPLDKCGGG  120
GGLGMDDWES VLPESPGQGP SILGLIMGDV EDPSLGLNKL LQSGGGGGGV GGGGGGDSHL  180
DLEFSGSFSG VDHGLVFEPN TLAGESIVDP SLQAPSYARL SAAVSNSNAM FSGVFQNQNQ  240
LSETVDEKPQ IFNSPQVMMN QNQTQFTHNP PLFMPLPFAS PGQDHHQNHH HFLGGVPPTK  300
RFNSGPIPPN YPVKSPFLDS GQESINRRQQ QQQQPQQVQL FPHQQQRPSM AALAKQKMVN  360
EDIANQQLQQ GISDQLFKAV ELIETGNSVL AQGILARLNH QLSSPIGKPF QRAAFYFKEA  420
LQSLLQNPSN PSKPSPLSII FKIAAYKSFS EVSPVLQFAN FTSNQALLEA FNGSGRIHII  480
DFDIGYGGQW ASLMQELALR GPPFLKITAF ASTSTHDDFE LGFTQENLKN FANDLNIGFE  540
LEIINIESLN SGSWPLALNV SENEAIAVNL PVGSLSLPMI LRFIKHLNPK IVVSVDRGCS  600
RVDAPFPHRV IHGLHSYSAL LESMEAVTVN MDAQLKIERY LVQPCIEKVV TSSQCLNERL  660
PPLKSMFLSS GFSPLTFSNF TESQAECLLQ RTPVQGFHID KRHSSLVLCW HRKELVSISA  720
WRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-144GRAS family protein