PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022958875.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | LBD | ||||||||
Protein Properties | Length: 229aa MW: 23666.8 Da PI: 8.0829 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.1 | 1.6e-39 | 23 | 123 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC ++C++apyf +eq + +fa+vhk+FGasnv+kll ++p ++r da+ +++ye++ar+rdPvyG+v++i++lq+q+ +l+ael XP_022958875.1 23 PCGACKFLRRKCIPGCIFAPYFDSEQgAGHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYESQARLRDPVYGCVAHIFALQRQVVSLQAEL 117 7***********************9988******************************************************************* PP DUF260 95 allkee 100 ++l+++ XP_022958875.1 118 SYLQAH 123 *99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence |
MSANPSTSGG GGGGGGGGGG GGPCGACKFL RRKCIPGCIF APYFDSEQGA GHFAAVHKVF 60 GASNVSKLLL HIPVHKRLDA VVTICYESQA RLRDPVYGCV AHIFALQRQV VSLQAELSYL 120 QAHLATLELP SPPPPPNFAV QPPVSISDLP SASSLPVTYD LSSLFDPMAQ PAWAMQQQRL 180 DHRQFSSGGA GGSSTTAGEG DLQALARALL HRHGGPPCSD ASSPPSLSK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 4e-70 | LBD family protein |