PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022958142.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 1506aa MW: 167425 Da PI: 6.7068

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022958142.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0015	1391	1416	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ykC C +sF +k +L H r+ + XP_022958142.1 1391 YKCDleGCRMSFETKVELALHKRNqC 1416 99********************9876 PP
2	zf-C2H2	11.2	0.0012	1474	1500	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg sF+ s++ rH r+ H XP_022958142.1 1474 YKCKveGCGLSFRFVSDYSRHRRKtgH 1500 99*********************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1506 aa Download sequence
MGGVEIPKWL KGLPLAPEFR PTDTEFADPI AYISKIEKEA SAFGICKIIP PFPKPSKKYV 60 ISNLNKSLSR SSELSRDLNA SNVRSSSKLG STDGANEREV RAVFTTRHQE LGQSVRKTKG 120 VVQNPQFGVH KQVWQSGEAY TLEQFESKSK VFARSVLGGI KEPSPLVVES LFWKAATEKP 180 IYVEYANDVP GSAFGEPEGK FRYFHRRRRK RNYYNRKERS SELKSGEMET LTETLARDSR 240 GTSTRDNLNT SAEMLKPSTS TVSSEDASHN SRGKSSDSCI NMEGTAGWRL SNSPWNLQVI 300 ARSPGSLTRY MPDDIPGVTS PMVYIGMLFS WFAWHVEDHE LHSMNFLHVG SPKTWYSIPG 360 DHAFAFEEVV RTQAYGGSVD HLAALTLLGE KTSLLSPETV IASGIPCCRL IQNPGEFVVT 420 FPRAYHVGFS HGFNCGEAAN FGTPQWLSVA KDAAVRRAAM NYLPMLSHQQ LLYLLTMSFV 480 SRVPRSLLPG VRSSRLRDRQ KEEREFMVKK GFVEDILREN NMLSVLLEKE SSCRAVLWNP 540 DMLPYLSNSQ VANTNSAVAT SPRENTSCNH IENLDRNDKS VQNFIDEMAL DLQSMNDIYL 600 DSDDLSCDFQ VDSGTLACVA CGILGFPFMS VVQPSEKASR ELSGDHLSTH KRGGVLGPKD 660 VHCSPHFDGT HPGDSTSVPD VNCLSKDPSV GSVPKFDKGW NTFSKFLRPR SFCLLHAVDT 720 VELLQKKGGA NILVICHSDY HKIKANAVAI AEEIGHNFVY NEVRLDIASE EDLGLIDLAV 780 DEERDECRED WTSRLGINLR HCVKVRKSSP TKQVQHALAL GGLFLNRDHG FDLSNLNWPA 840 KRSRSKKINH LQHSKRFQSM HLKEEVSGEK SDSIIAKREE KFFQYYRRNK KSGNSTGVSS 900 VTQPASSGDS SDLCNDRSFR SNASELAIPD PTGTTDQQDA VLQDCGNTNS ISTVGRMTEP 960 QMENCLPEEA YIDGELPVDD SGMQQNITTA VDTSERNKKA VLPSCTVGSL VNSINESLEI 1020 PQDQELLESR NKTDQECDIA SEEQSHAPAG VCSDEVNLAE STGLHCSIVL ESSKVVLDSE 1080 DVKNSSSEAC DGMTRDETAI ADGIKGMDED SCSLIPIKLQ LCPDTEGHSQ FGHLDDRTNT 1140 GTPDAATSNL RDRTSEVSRM ACEGPDLCNA ATSDGLLNNL QTFDADVETQ SISGVEVQLK 1200 AQLSSCLADE KSIKNLGSQE DVDNLSDALM SSTGVQNETP TEPRIPMDEP GFKSCILGES 1260 PMDVETGGEA SDRKNLTGGK APGIDSPLTQ SKTRDATEIC SSKHKPSSDV EKRRKRKRHD 1320 KLRIENELSS FDFIRSPCEG LRPRAIKNLT HQRDIDVNIS VQEKPERKRV RKPSDSVPPK 1380 PKKEIRRKGS YKCDLEGCRM SFETKVELAL HKRNQCPHEG CGKRFSSHKY AMLHQRVHDD 1440 DRPLKCPWKG CSMSFKWAWA RTEHIRVHTG ERPYKCKVEG CGLSFRFVSD YSRHRRKTGH 1500 YVDQPT

Sequence ? help Back to Top

Protein Sequence Length: 1506 aa Download sequence

MGGVEIPKWL KGLPLAPEFR PTDTEFADPI AYISKIEKEA SAFGICKIIP PFPKPSKKYV  60
ISNLNKSLSR SSELSRDLNA SNVRSSSKLG STDGANEREV RAVFTTRHQE LGQSVRKTKG  120
VVQNPQFGVH KQVWQSGEAY TLEQFESKSK VFARSVLGGI KEPSPLVVES LFWKAATEKP  180
IYVEYANDVP GSAFGEPEGK FRYFHRRRRK RNYYNRKERS SELKSGEMET LTETLARDSR  240
GTSTRDNLNT SAEMLKPSTS TVSSEDASHN SRGKSSDSCI NMEGTAGWRL SNSPWNLQVI  300
ARSPGSLTRY MPDDIPGVTS PMVYIGMLFS WFAWHVEDHE LHSMNFLHVG SPKTWYSIPG  360
DHAFAFEEVV RTQAYGGSVD HLAALTLLGE KTSLLSPETV IASGIPCCRL IQNPGEFVVT  420
FPRAYHVGFS HGFNCGEAAN FGTPQWLSVA KDAAVRRAAM NYLPMLSHQQ LLYLLTMSFV  480
SRVPRSLLPG VRSSRLRDRQ KEEREFMVKK GFVEDILREN NMLSVLLEKE SSCRAVLWNP  540
DMLPYLSNSQ VANTNSAVAT SPRENTSCNH IENLDRNDKS VQNFIDEMAL DLQSMNDIYL  600
DSDDLSCDFQ VDSGTLACVA CGILGFPFMS VVQPSEKASR ELSGDHLSTH KRGGVLGPKD  660
VHCSPHFDGT HPGDSTSVPD VNCLSKDPSV GSVPKFDKGW NTFSKFLRPR SFCLLHAVDT  720
VELLQKKGGA NILVICHSDY HKIKANAVAI AEEIGHNFVY NEVRLDIASE EDLGLIDLAV  780
DEERDECRED WTSRLGINLR HCVKVRKSSP TKQVQHALAL GGLFLNRDHG FDLSNLNWPA  840
KRSRSKKINH LQHSKRFQSM HLKEEVSGEK SDSIIAKREE KFFQYYRRNK KSGNSTGVSS  900
VTQPASSGDS SDLCNDRSFR SNASELAIPD PTGTTDQQDA VLQDCGNTNS ISTVGRMTEP  960
QMENCLPEEA YIDGELPVDD SGMQQNITTA VDTSERNKKA VLPSCTVGSL VNSINESLEI  1020
PQDQELLESR NKTDQECDIA SEEQSHAPAG VCSDEVNLAE STGLHCSIVL ESSKVVLDSE  1080
DVKNSSSEAC DGMTRDETAI ADGIKGMDED SCSLIPIKLQ LCPDTEGHSQ FGHLDDRTNT  1140
GTPDAATSNL RDRTSEVSRM ACEGPDLCNA ATSDGLLNNL QTFDADVETQ SISGVEVQLK  1200
AQLSSCLADE KSIKNLGSQE DVDNLSDALM SSTGVQNETP TEPRIPMDEP GFKSCILGES  1260
PMDVETGGEA SDRKNLTGGK APGIDSPLTQ SKTRDATEIC SSKHKPSSDV EKRRKRKRHD  1320
KLRIENELSS FDFIRSPCEG LRPRAIKNLT HQRDIDVNIS VQEKPERKRV RKPSDSVPPK  1380
PKKEIRRKGS YKCDLEGCRM SFETKVELAL HKRNQCPHEG CGKRFSSHKY AMLHQRVHDD  1440
DRPLKCPWKG CSMSFKWAWA RTEHIRVHTG ERPYKCKVEG CGLSFRFVSD YSRHRRKTGH  1500
YVDQPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1312	1318	KRRKRKR
2	1313	1318	RRKRKR
3	1366	1373	ERKRVRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein