PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022958035.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 602aa    MW: 65939.3 Da    PI: 6.2567
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022958035.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS346.54.2e-1062386023374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     + ++e+A a+s+g+l  ++++La + ++++ +g+++qRla y++ AL++r++       + +pp  ++    +e+ aa++ +++vsP++k+++++
  XP_022958035.1 238 QSVIEAAAAISEGKLDVVDEILAPVVKISNARGSSVQRLAEYMVFALKSRVNP------AEFPPPVAE-IFGDEHSAATQSLYDVSPCFKLAFMA 325
                     6789************************************************9......444444333.46999********************* PP

            GRAS  98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     aN aIlea+e+e +++Hi+Dfdi++G+Q+++L++ L+ R++g+  +++T+v++ e+g+ e+l+++ge L+++A+elgv f+fn+ v ++ ++l+ 
  XP_022958035.1 326 ANLAILEAIEEEdRKLHIVDFDIGKGGQYMNLIHLLSGRQKGKVVVKLTAVVA-ENGRDERLKHVGESLSQLAKELGVGFKFNM-VKQEPSELTR 418
                     ************7788*************************************.779***************************.799******* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     e+L ++ +E+laVn++++l++++desvs+e++rde+L+ vk l P vv+v+eqe+++n+++F++r++e++ yy +lfds+++++  ++ +r+kvE
  XP_022958035.1 419 ESLGCDADESLAVNFAFKLYQMPDESVSTENPRDELLRRVKALAPAVVTVMEQELNTNTAPFAARVSESCIYYGSLFDSIDSTVWCDHPDRVKVE 513
                     *********************************************************************************************** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +  lgr++ n +aceg+er+er+e  +kWr+r+++aGF++ ++se +a+++k+ l+  +  + g++v+ee+g +++gW++r+L++++aWr
  XP_022958035.1 514 EG-LGRKLANSLACEGRERVERCEVSGKWRARMGMAGFESRRMSEMVAESMKTRLSSGYrvNPGFTVKEENGGICFGWMGRTLTVTTAWR 602
                     **.*************************************************98887655889**************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    
MQSGFTGGGP PDFYTSGRSM ANPSHPNPYR SQLSGGAFVD PTIPQIARQI PSSLLGKRNL  60
SDLHSLNQYT HHNLPVNNLF LRSVKPRAGF SHPISPLSNF DLYSTMSLPS SEVQTHRLYG  120
SSSAAVLQQL RQQPNSSAVT LRDLQNLDSE KKKMMNHRLQ ELEKQLLEDN DDDDGSDAAS  180
VITSSTSAWC ETMYNLISPT APPNQKPVST SPTTSASSSC SSSTSSSVAS PSSDSWKQSV  240
IEAAAAISEG KLDVVDEILA PVVKISNARG SSVQRLAEYM VFALKSRVNP AEFPPPVAEI  300
FGDEHSAATQ SLYDVSPCFK LAFMAANLAI LEAIEEEDRK LHIVDFDIGK GGQYMNLIHL  360
LSGRQKGKVV VKLTAVVAEN GRDERLKHVG ESLSQLAKEL GVGFKFNMVK QEPSELTRES  420
LGCDADESLA VNFAFKLYQM PDESVSTENP RDELLRRVKA LAPAVVTVME QELNTNTAPF  480
AARVSESCIY YGSLFDSIDS TVWCDHPDRV KVEEGLGRKL ANSLACEGRE RVERCEVSGK  540
WRARMGMAGF ESRRMSEMVA ESMKTRLSSG YRVNPGFTVK EENGGICFGW MGRTLTVTTA  600
WR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-134GRAS family protein