PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022958022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | ARF | ||||||||
Protein Properties | Length: 686aa MW: 76582.9 Da PI: 6.4367 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.4 | 6.4e-24 | 129 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+kvlt sd++++g +++ +k+a+e+ + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + + XP_022958022.1 129 FCKVLTASDTSTHGGFSVLRKHANEClppldmtQ--ATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLTAGDSFVFL--RGD 219 99****************************9543..445568************************************************..347 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++l+v+v+r+ XP_022958022.1 220 NGQLRVGVRRR 230 8889*****97 PP | |||||||
2 | Auxin_resp | 95.3 | 9.7e-32 | 255 | 333 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a+ha++t++ F v+Y+Pr+ +F+++++k+++a++ k+s+GmRf m+fe+eds+err+sGt++g d++p +W nS WrsL XP_022958022.1 255 ASHAVTTQTRFVVYYKPRT--CQFIISLNKYLEAVNYKFSLGMRFNMSFEGEDSPERRFSGTIIGAGDISP-HWANSSWRSL 333 689***************6..89**********************************************99.*********9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 686 aa Download sequence |
MTFHGGDSYT QSCVSAQGRG RDDLYMELWR ACAGPLVDIP RVDEKVFYFP QGHMEQLEAS 60 TNLELNKRIP LFNLSSKILC RVIHIDPLAD HESDEVYAQI TLLPESNQSE PRSLDPCPPE 120 PVKPVVHSFC KVLTASDTST HGGFSVLRKH ANECLPPLDM TQATPTQDLV AKDLHGYEWR 180 FKHIFRGQPR RHLLTTGWST FVTSKRLTAG DSFVFLRGDN GQLRVGVRRR AQQQSSMPPS 240 VISSQSMHLG VLATASHAVT TQTRFVVYYK PRTCQFIISL NKYLEAVNYK FSLGMRFNMS 300 FEGEDSPERR FSGTIIGAGD ISPHWANSSW RSLRVQWDEQ TSILRPDRVS PWDIEPLTSS 360 AVSSLSQPVS KNKRPRQSTE TPAHDGADLT KSAHWDSGLA QSHDGKQFGN ATESRLGENN 420 ELCHHSEIDT ISNSTCVSRT QTDGTWLFST QSNGYKDPVN DTAQDYKTVP VCGWSILSGP 480 SKVSDDQILD PTENGRKGET VASCRLFGID LNHLAKLPAE KASSQPSSMS SHTDGRISTL 540 SVAQSESKSD NIEASIDRKL EPLQASLKET QSSSTNTRSR TKVHMHGMAV GRAVDLTILE 600 GYDQLIDELE KMFDVRGQLS ARDKWEIVYT DDEGDMMLVG DDPWEEFCNM VRRIFICSRE 660 QVKKMSSGSK QLASIEVEGA VLRMLE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | ARF family protein |