PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022957903.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 656aa MW: 72539.5 Da PI: 8.0803

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022957903.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.3	1.5e-23	169	270	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ ++ + s++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv++++L +gD v+F + + XP_022957903.1 169 FCKTLTASDTSTHGGFSVPRRAAEDCfppldytQLRP--SQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSLFVSQKNLISGDAVLFL--RGE 259 99**************************9887775..458********************************************..449 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+++++r+ XP_022957903.1 260 NGELRLGIRRA 270 9999**996 PP
2	Auxin_resp	121.3	7.4e-40	295	376	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+stks+F+v+YnPra +++Fv++++k++k+++++v+vG+Rfkm+fe++ds+err+ G+v g+ d+dp+rWpnSkWr+L XP_022957903.1 295 VVKAISTKSIFDVFYNPRAYHAQFVISCQKYVKSINNPVTVGTRFKMRFEMDDSPERRFNGVVLGIGDMDPLRWPNSKWRCL 376 6899*****************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence
MEIDLNLTAS DVGKNAYCNG NCEEGRCNCC LSSSTSSCSS NSSPALVSSS TYLELWHACA 60 GPLTSLPKKG NVVVYFPQGH LEQIASASPF SPMEMRTFDL QPQILCRVIN VHLLANKEND 120 EVYTQLTLLP LPEFLGTGLE GKELEELALN GADGDGSGVS PTRSTPHMFC KTLTASDTST 180 HGGFSVPRRA AEDCFPPLDY TQLRPSQELI AKDLHGVEWR FKHIYRGQPR RHLLTTGWSL 240 FVSQKNLISG DAVLFLRGEN GELRLGIRRA VRPRNGLPNS IVGNQNSCAD DLARVVKAIS 300 TKSIFDVFYN PRAYHAQFVI SCQKYVKSIN NPVTVGTRFK MRFEMDDSPE RRFNGVVLGI 360 GDMDPLRWPN SKWRCLTVRW DKDGDHQERV SPWEIESSVS LPPLSVQSSP RLKKLRTSLQ 420 AAPPNAFAVG RGGFMDFEDS IRSSKVLQGQ ENVGIVSPFY GRDTTKRSLE FEVRSSAHQA 480 SGGAEKYRGD YVKVHPNSSF TGFMESERFL KVLQGQEICS LRPQTRKPEH CLGVWGKFNL 540 SDNSFNTFHS PNSSFYHMAS NGAQNMYFPP SEFYSTGQAA AVMRSNDGNF PRESALFGPS 600 VDASVMSTTS GSNIRNSKDE NVNENSTGCR LFGFSLTTET ATNMQSSGKR SCTKSC

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence

MEIDLNLTAS DVGKNAYCNG NCEEGRCNCC LSSSTSSCSS NSSPALVSSS TYLELWHACA  60
GPLTSLPKKG NVVVYFPQGH LEQIASASPF SPMEMRTFDL QPQILCRVIN VHLLANKEND  120
EVYTQLTLLP LPEFLGTGLE GKELEELALN GADGDGSGVS PTRSTPHMFC KTLTASDTST  180
HGGFSVPRRA AEDCFPPLDY TQLRPSQELI AKDLHGVEWR FKHIYRGQPR RHLLTTGWSL  240
FVSQKNLISG DAVLFLRGEN GELRLGIRRA VRPRNGLPNS IVGNQNSCAD DLARVVKAIS  300
TKSIFDVFYN PRAYHAQFVI SCQKYVKSIN NPVTVGTRFK MRFEMDDSPE RRFNGVVLGI  360
GDMDPLRWPN SKWRCLTVRW DKDGDHQERV SPWEIESSVS LPPLSVQSSP RLKKLRTSLQ  420
AAPPNAFAVG RGGFMDFEDS IRSSKVLQGQ ENVGIVSPFY GRDTTKRSLE FEVRSSAHQA  480
SGGAEKYRGD YVKVHPNSSF TGFMESERFL KVLQGQEICS LRPQTRKPEH CLGVWGKFNL  540
SDNSFNTFHS PNSSFYHMAS NGAQNMYFPP SEFYSTGQAA AVMRSNDGNF PRESALFGPS  600
VDASVMSTTS GSNIRNSKDE NVNENSTGCR LFGFSLTTET ATNMQSSGKR SCTKSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60450.1	0.0	ARF family protein