PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022957634.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 349aa MW: 38774 Da PI: 7.5566

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022957634.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.1e-05	184	203	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_022957634.1 184 FSCPLCFKTFNRYNNMQMHM 203 89*****************9 PP
2	zf-C2H2	15.4	5.2e-05	268	290	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk F + + ++H +++ XP_022957634.1 268 FTCRKCGKAFAVRGDWRTHEKNC 290 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MADPYSINAS SFGLYHYFSS SSSPPSNSNP FSPYDLFSFS YSNDDNDNNN NTLKNPSSSP 60 RVLPLLSLSP VRHDHQDHSF SLNKNKNLCS PCEEDDDETV TVALHLGLPS APSSSSSSDL 120 ILRLSSTEIS DKLEGQLEEA VPVVVPNYYS VSSSSSSSTT GGGLNKGQYW IPTPAQILIG 180 PTQFSCPLCF KTFNRYNNMQ MHMWGHGSQY RKGPQSLRGT QPTAMLRLPC YCCAPGCRNN 240 IDHPRSKPLK DFRTLQTHYK RKHGIKPFTC RKCGKAFAVR GDWRTHEKNC GKLWHCTCGS 300 DFKHKRSLKD HIKAFGHGHA AYGIGSFDED DEPASEIEHD NDLSHSNGD

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MADPYSINAS SFGLYHYFSS SSSPPSNSNP FSPYDLFSFS YSNDDNDNNN NTLKNPSSSP  60
RVLPLLSLSP VRHDHQDHSF SLNKNKNLCS PCEEDDDETV TVALHLGLPS APSSSSSSDL  120
ILRLSSTEIS DKLEGQLEEA VPVVVPNYYS VSSSSSSSTT GGGLNKGQYW IPTPAQILIG  180
PTQFSCPLCF KTFNRYNNMQ MHMWGHGSQY RKGPQSLRGT QPTAMLRLPC YCCAPGCRNN  240
IDHPRSKPLK DFRTLQTHYK RKHGIKPFTC RKCGKAFAVR GDWRTHEKNC GKLWHCTCGS  300
DFKHKRSLKD HIKAFGHGHA AYGIGSFDED DEPASEIEHD NDLSHSNGD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-125	C2H2 family protein