PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022957439.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | NF-YC | ||||||||
Protein Properties | Length: 281aa MW: 31430.8 Da PI: 5.0594 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 61.5 | 1.7e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ +fdfl div r XP_022957439.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDIVSR 86 5789**************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence |
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMNSLHLKHC VQSYSVFDFL RDIVSRVPDY GHGHSDGAVD DRKRRKPLAD ESNDIDEMKK 120 SKTHDMSHGS TGRGRGRGRG RGRGRPARSV EKDNFQPNPD VDPCTSIENT NKNPNQDVHM 180 EPHIEPSETP KEVGKDNQTI QNIDLNADVN ASKDSKTAPA AKSDVPVEPA EPTTTESEAK 240 AADEFPAWPL SDVDKMAIDP LQYAHLSTRV DEEEEDYDEE E |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 142 | RGRGRGRGRG |
2 | 133 | 143 | RGRGRGRGRGR |
3 | 135 | 144 | RGRGRGRGRG |
4 | 135 | 145 | RGRGRGRGRGR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 4e-71 | NF-YC family protein |