PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022957396.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family ARF
Protein Properties Length: 854aa    MW: 95034.5 Da    PI: 6.007
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022957396.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.3e-23140241199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_022957396.1 140 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 230
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_022957396.1 231 KNQLLLGIRRA 241
                     9999****997 PP
2Auxin_resp118.17.3e-39266349183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+v+YnPras+seFv+++ k++ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  XP_022957396.1 266 AAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVK 349
                     79********************************86599******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    
MLSIESDWVK LDMKLSTSGF GQQDHEGGEK KCLNSELWHA CAGPLVSLPT SGTRVVYFPQ  60
GHSEQVAATT NKEVDGHIPN YPNLPPQLIC QLHNVTMHAD VETDEVYAQM TLQPLTAQEQ  120
KDTFLPMELG IPSRQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD FSQQPPAQEL  180
IARDLHDVEW KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWNE KNQLLLGIRR  240
ATRPQTVMPS SVLSSDSMHI GLLAAAAHAA ATNSCFTVFY NPRASPSEFV IPLTKYVKAV  300
FHTRVSVGMR FRMLFETEES SVRRYMGTIT GISDLDPVRW SNSHWRSVKV GWDESTAGER  360
QPRVSLWEIE PLTTFPMYPS LFPLRLKRPW HPGVSSVHDN RDDASNGLMW LRGGVGEQAL  420
HSLNLQSAGS LPWLQQRLDS SMFGNDHNQQ YQAMLAAGMP NLGGVDMLRQ QIMHLQQPFQ  480
YAQQAGLHNS LLQLQQQQLV QQSMPQNILQ APTQVMAENL PQHILQQTLQ NQPEDLPNQQ  540
QHTYHDTVQV QSNQFHQGGH SNVPSPTFPR SNLMDSNSNY PESISSRRNI IASSCAEGTG  600
NLSNIYRSGQ SILTEQLPQQ SPVSKNAHSP VDAHPNSMSF PFSGRDSILE LGNCNSDSPS  660
PTLFGVNIDS SGLLLPSNVP TYASPSIAPD STSMPLGDSG FQNSLYNCVQ GSSELLHNSG  720
QVDPSNPTQT FVKVYKTGSI GRSLDISRFS SYQELREELA QMFGIEGQLE DPRRSGWQLV  780
FVDRENDALL LGDDPWEAFV NNVWYIKILS PQDVQELREQ VIESFNPIDG QRLTSGGNEA  840
ENVSGLPSVG SLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein