PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022957347.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 429aa MW: 47986.2 Da PI: 6.2791

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022957347.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.2	1.3e-15	90	149	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n+ k+ ++++lg ++ +e Aa+ ++ a++k++g XP_022957347.1 90 SIYRGVTRHRWTGRFEAHLWDkSSWNNiqnKKgRQVYLGAYDNEEAAARTYDLAALKYWG 149 57*****************777799977447***********************98 PP
2	AP2	52.2	1.5e-16	192	244	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g+ XP_022957347.1 192 SKYRGVARHHHNGRWEARIGRvF---G-SKYLYLGTYNTQEEAAAAYDMAAIEYRGA 244 89**99******99966...3.5***********************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MRIISPPVSS SSSSSSSSSS SSSSSSSSSS SSCIGSDSGI HNNNLAAPHR PQSEKTTAKR 60 RRRNQDETKC QIHNHNANGS NNASPARRSS IYRGVTRHRW TGRFEAHLWD KSSWNNIQNK 120 KGRQVYLGAY DNEEAAARTY DLAALKYWGP GTTLNFPVES YTNEMEEMRK VSKEEYLASL 180 RRQSSGFSRG VSKYRGVARH HHNGRWEARI GRVFGSKYLY LGTYNTQEEA AAAYDMAAIE 240 YRGANAVTNF DISNYIGRLQ NKSSPDDPSC SPASSHGEVV QQQQHDQDQQ RQQQQQIAFS 300 SPPDLQFSIE NNPSMVVMDE PPTQDDHDLH WSFLDTGLFV HVPDLPLEKS SELADLYFDE 360 IRFEDDIGLM FEASLENNKN CEGNDEDDDN VGKKEVNNCN EKIRLFAATT TTSPSSSSIT 420 TSVSCEFRV

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MRIISPPVSS SSSSSSSSSS SSSSSSSSSS SSCIGSDSGI HNNNLAAPHR PQSEKTTAKR  60
RRRNQDETKC QIHNHNANGS NNASPARRSS IYRGVTRHRW TGRFEAHLWD KSSWNNIQNK  120
KGRQVYLGAY DNEEAAARTY DLAALKYWGP GTTLNFPVES YTNEMEEMRK VSKEEYLASL  180
RRQSSGFSRG VSKYRGVARH HHNGRWEARI GRVFGSKYLY LGTYNTQEEA AAAYDMAAIE  240
YRGANAVTNF DISNYIGRLQ NKSSPDDPSC SPASSHGEVV QQQQHDQDQQ RQQQQQIAFS  300
SPPDLQFSIE NNPSMVVMDE PPTQDDHDLH WSFLDTGLFV HVPDLPLEKS SELADLYFDE  360
IRFEDDIGLM FEASLENNKN CEGNDEDDDN VGKKEVNNCN EKIRLFAATT TTSPSSSSIT  420
TSVSCEFRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	1e-105	AP2 family protein