PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022956880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 686aa MW: 74629.3 Da PI: 7.1407 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.5 | 4.6e-08 | 275 | 295 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd+C +aHg XP_022956880.1 275 PCPEFRK-GACPKGDSCEYAHG 295 8******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 686 aa Download sequence |
MCSGSKNKVA FSNSAMESKF QKLRDGALFS ANSILLELSA SDDVDGFKRE VEEKDLDVDE 60 PSCWYGRGIG SKKMGFEERT PLMIAAMYGS SKVVKYLIET GKVDINRACG SDMTTALHCA 120 SAGGSGSSLE TIKLLLDGSA DVNCVDANGR KPVDLIVSAC RMVCYSGRKA MEMLLRGDGM 180 AGVGDLSLFL EEDQQKISAS LSAKEGSDKK EYPVDISLPD INSGIYGTDD FRMYTFKVKP 240 CSRAYSHDWT ECPFVHPGEN ARRRDPKKYP YSCVPCPEFR KGACPKGDSC EYAHGVFESW 300 LHPAQYRTRL CKDETGCTRK VCFFAHRPDE LRPVYASTGS GMPSPRSLSS SAADMSTMSP 360 LALGSSSLSL PTASTPPMSP LASVSSPKNG NLWQNKINLT PPALQLPGSR LKATLSARDL 420 DLEMELLGLE KNVSQMQHQQ QLIDEISRLS APSYWSADIS RSAELKPSNL DDMFGSLDSS 480 LLSQLQGTSL KTPISAQVQS PTGLQMRQNM NQLRASYPAN LSSSPVKKPS SFGFDSSSAV 540 AAAVMNSRSA AFAKRSQSFI DRAAVTRHPG LTGAANSAAT MSSHLSDWNS PDGKLDWGMQ 600 GNDLNKLKKS ASFGIRNNSM GTPTFASPVE EPDVSWVNSL VKDVPSDRFG MFGAEKRAYN 660 LKRDINEMLP SWMEQQLYAE QEQTVA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40140.2 | 0.0 | C3H family protein |