PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022956754.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

CO-like

Protein Properties

Length: 401aa MW: 45716.9 Da PI: 7.9813

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022956754.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.4	1.4e-08	17	60	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + k+++++C ++ +lC+ C + H+ H++v XP_022956754.1 17 ARPCDSCIIKRARWYCAADDAFLCQACDASVHSAnslarrHERV 60 678*****************************657788888876 PP
2	CCT	67	5.2e-23	346	389	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++ XP_022956754.1 346 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRS 389 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MMPRKSVQKT AEGGKTARPC DSCIIKRARW YCAADDAFLC QACDASVHSA NSLARRHERV 60 RLPTVSYRPS SDNSSAASWH QGFTRKPRSP RMGKTAPMRK PFPQVPEVSA KEETEDQEQL 120 LLYRVPELGT DSKVGNLFSF VGEKENSIGY LSYDMDPAEF AADVESLLGK SLNNKCFDME 180 ELGLAASKDH STIKDDYSLN SHELIRIEQD EIEKLTPMLS AEADTMREPF ELNFMELVRN 240 PTTCGEENKV MMEVKEVVKK GELEMEETKI VNNKKKVSLS LDSEGVIMAW GSRGTPWMSD 300 DGPNLDLNYH WLDYMGTWES EYYYQAFGEV SGGIRRQAAA GVEGEREARV SRYREKRRTR 360 LFAKKIRYEV RKLNAEKRPR MKGRFVKRST CFAPPPLPLF N

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MMPRKSVQKT AEGGKTARPC DSCIIKRARW YCAADDAFLC QACDASVHSA NSLARRHERV  60
RLPTVSYRPS SDNSSAASWH QGFTRKPRSP RMGKTAPMRK PFPQVPEVSA KEETEDQEQL  120
LLYRVPELGT DSKVGNLFSF VGEKENSIGY LSYDMDPAEF AADVESLLGK SLNNKCFDME  180
ELGLAASKDH STIKDDYSLN SHELIRIEQD EIEKLTPMLS AEADTMREPF ELNFMELVRN  240
PTTCGEENKV MMEVKEVVKK GELEMEETKI VNNKKKVSLS LDSEGVIMAW GSRGTPWMSD  300
DGPNLDLNYH WLDYMGTWES EYYYQAFGEV SGGIRRQAAA GVEGEREARV SRYREKRRTR  360
LFAKKIRYEV RKLNAEKRPR MKGRFVKRST CFAPPPLPLF N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	357	373	RRTRLFAKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68520.1	5e-72	CO-like family protein