PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022956112.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 475aa MW: 51231.3 Da PI: 8.2329 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.4 | 8.7e-12 | 49 | 73 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C +++rtG+C yG+rC+F+H++ XP_022956112.1 49 ETDCIYYLRTGFCGYGSRCRFNHPR 73 578********************96 PP | |||||||
2 | zf-CCCH | 38.1 | 2.5e-12 | 95 | 119 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ XP_022956112.1 95 QPVCQYYMRTGMCKFGASCKYHHPQ 119 689********************97 PP | |||||||
3 | zf-CCCH | 28.3 | 3e-09 | 140 | 165 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++++ +Ck+G++CkF+H++ XP_022956112.1 140 GEKECSYYLKNWQCKFGATCKFHHPE 165 7899******99************96 PP | |||||||
4 | zf-CCCH | 38.9 | 1.4e-12 | 297 | 323 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H+p XP_022956112.1 297 PGQPECQYYMRTGDCKFGSSCRYHHPP 323 5789*********************97 PP | |||||||
5 | zf-CCCH | 33.6 | 6.4e-11 | 345 | 369 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C +f++ G Ck+G+ CkF H++ XP_022956112.1 345 APPCTHFMQRGMCKFGPACKFDHSM 369 689********************85 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence |
MNPYGHSMEP SHSDPSPEWT TSGPDTAHGE PLWPLGSRER ESYPERPEET DCIYYLRTGF 60 CGYGSRCRFN HPRERNAVLG GSRLAGREYP ERIGQPVCQY YMRTGMCKFG ASCKYHHPQQ 120 ERGSLSPVSL NFYGYPLRPG EKECSYYLKN WQCKFGATCK FHHPEPAGLQ FPAPSPIQVT 180 PVPAPSVYPP VQSPSAHSSQ QYGVILARPS LLSSPYVPGP YGPMLVSPGV FPSWSPYPAP 240 MSPVASPSAQ PSVGSGPLYG MAHVSPSAPV YAGSYQPMPS AGPSSTSQKE HSFPERPGQP 300 ECQYYMRTGD CKFGSSCRYH HPPEFVTSGP GVVLSQLGLP LRPGAPPCTH FMQRGMCKFG 360 PACKFDHSMD RLSYSPSASS LADMPVAPYP VGSVAGTLAP SSSSSELKPE HFSGSRKDSN 420 PSRMSSSMST STSGLVGSTT SRTEMYSHSS VQRSSQTSGP SQSSTSSTAS VEGCT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-132 | C3H family protein |