PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022956112.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family C3H
Protein Properties Length: 475aa    MW: 51231.3 Da    PI: 8.2329
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022956112.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.48.7e-124973327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    +  C +++rtG+C yG+rC+F+H++
  XP_022956112.1 49 ETDCIYYLRTGFCGYGSRCRFNHPR 73
                    578********************96 PP

2zf-CCCH38.12.5e-1295119327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C++++rtG Ck+G++Ck++H++
  XP_022956112.1  95 QPVCQYYMRTGMCKFGASCKYHHPQ 119
                     689********************97 PP

3zf-CCCH28.33e-09140165227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C++++++ +Ck+G++CkF+H++
  XP_022956112.1 140 GEKECSYYLKNWQCKFGATCKFHHPE 165
                     7899******99************96 PP

4zf-CCCH38.91.4e-12297323127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C++++rtG Ck+G++C+++H+p
  XP_022956112.1 297 PGQPECQYYMRTGDCKFGSSCRYHHPP 323
                     5789*********************97 PP

5zf-CCCH33.66.4e-11345369327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++C +f++ G Ck+G+ CkF H++
  XP_022956112.1 345 APPCTHFMQRGMCKFGPACKFDHSM 369
                     689********************85 PP

Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    
MNPYGHSMEP SHSDPSPEWT TSGPDTAHGE PLWPLGSRER ESYPERPEET DCIYYLRTGF  60
CGYGSRCRFN HPRERNAVLG GSRLAGREYP ERIGQPVCQY YMRTGMCKFG ASCKYHHPQQ  120
ERGSLSPVSL NFYGYPLRPG EKECSYYLKN WQCKFGATCK FHHPEPAGLQ FPAPSPIQVT  180
PVPAPSVYPP VQSPSAHSSQ QYGVILARPS LLSSPYVPGP YGPMLVSPGV FPSWSPYPAP  240
MSPVASPSAQ PSVGSGPLYG MAHVSPSAPV YAGSYQPMPS AGPSSTSQKE HSFPERPGQP  300
ECQYYMRTGD CKFGSSCRYH HPPEFVTSGP GVVLSQLGLP LRPGAPPCTH FMQRGMCKFG  360
PACKFDHSMD RLSYSPSASS LADMPVAPYP VGSVAGTLAP SSSSSELKPE HFSGSRKDSN  420
PSRMSSSMST STSGLVGSTT SRTEMYSHSS VQRSSQTSGP SQSSTSSTAS VEGCT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-132C3H family protein