PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022956087.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

CO-like

Protein Properties

Length: 491aa MW: 54618.2 Da PI: 5.833

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022956087.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.5	4.9e-07	12	51	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ ++e+ ++l+C+ ++ lC C + H+ H XP_022956087.1 12 VPCDFCNEQVAILYCRADSAKLCLFCDKHVHSAnllsrkH 51 67***************************99545555556 PP
2	zf-B_box	24.2	7.2e-08	54	99	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+++ ++++++ C +++ lC++C H + H+++p+ XP_022956087.1 54 SQICDNCRSEPVSIRCSTDNLVLCQECDWDAHGScsvsaaHERTPI 99 689************************99955999999998876 PP
3	CCT	61.8	2.2e-21	443	487	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 R +a++RYkeKrktR+++K irYesRKa+A++R+RvKGrFvk++e XP_022956087.1 443 RGNAMQRYKEKRKTRRYDKYIRYESRKARADTRKRVKGRFVKASE 487 7789**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MVCSKSTTGE SVPCDFCNEQ VAILYCRADS AKLCLFCDKH VHSANLLSRK HVRSQICDNC 60 RSEPVSIRCS TDNLVLCQEC DWDAHGSCSV SAAHERTPIE GFTGCPSALE LVSLWGFDLG 120 EKKMEESEML VQNWVGSQDL VMPIDHWACR ASATAFNDLV VPNDNPYLFA NLNCTDAAST 180 LKRQNPSCGK HKQVIYKQLV ELLKRDFEGG DDGVDETRDG DAGGEEVGLQ NLVPETTNGV 240 CYWQEDLEAR QIHKEDNGVF VDAAAPPQPL LQQQTSFTSL LTMPPHVGLK ESERIGDETN 300 VCDGNPTRQS IQIWDFNLGR LRGHKDSSSF EDAYGTGNMG FTIKNFDEFF KETSPTSPKL 360 LGETYQINCS STHDDIPSFN GNINNTTLSQ GAATCESGNL SKSKLKCGYK NAQPIEKPII 420 VNVDSILSTS TTKADLELLA QNRGNAMQRY KEKRKTRRYD KYIRYESRKA RADTRKRVKG 480 RFVKASEAPV F

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MVCSKSTTGE SVPCDFCNEQ VAILYCRADS AKLCLFCDKH VHSANLLSRK HVRSQICDNC  60
RSEPVSIRCS TDNLVLCQEC DWDAHGSCSV SAAHERTPIE GFTGCPSALE LVSLWGFDLG  120
EKKMEESEML VQNWVGSQDL VMPIDHWACR ASATAFNDLV VPNDNPYLFA NLNCTDAAST  180
LKRQNPSCGK HKQVIYKQLV ELLKRDFEGG DDGVDETRDG DAGGEEVGLQ NLVPETTNGV  240
CYWQEDLEAR QIHKEDNGVF VDAAAPPQPL LQQQTSFTSL LTMPPHVGLK ESERIGDETN  300
VCDGNPTRQS IQIWDFNLGR LRGHKDSSSF EDAYGTGNMG FTIKNFDEFF KETSPTSPKL  360
LGETYQINCS STHDDIPSFN GNINNTTLSQ GAATCESGNL SKSKLKCGYK NAQPIEKPII  420
VNVDSILSTS TTKADLELLA QNRGNAMQRY KEKRKTRRYD KYIRYESRKA RADTRKRVKG  480
RFVKASEAPV F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	6e-70	CO-like family protein