PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022955982.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 385aa MW: 43066.9 Da PI: 8.9163

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022955982.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.4e-06	62	84	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_022955982.1 62 YVCEICNQGFQRDQNLQMHRRRH 84 9*********************9 PP
2	zf-C2H2	14.8	8.3e-05	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ XP_022955982.1 141 WVCDKCSKAYAVHSDFKAHLKTC 163 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MLKLSSSSAA ATASSSGGSP PPPPNSDHGI TSKRKRRPAG TPDPDAEVVS LSPKTLLESD 60 RYVCEICNQG FQRDQNLQMH RRRHKVPWKL LKRAETAEAV KKKVFVCPEL TCLHHDPRHA 120 LGDLVGIKKH FRRKHSNQKH WVCDKCSKAY AVHSDFKAHL KTCGTRGHSC DCGRVFSRVE 180 SFIEHQDACN LRQLRSDAPP PLLPPPLLQP YSRSISYTGA STSNDHSFQM ATPLRGFPIL 240 SSNLDRNINI NFPNHHDLEL HLSSPSSAFL KLSIGSNKEA KEERQLDLAI AEKAYAEEAR 300 REAKRQIEIA EVEFANAKMI RQQAQAELEK ARILKEEATR KMSSTIMEIT CQTCRLHFHM 360 SSVTPEETSL AISYMSSATT EGDGE

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MLKLSSSSAA ATASSSGGSP PPPPNSDHGI TSKRKRRPAG TPDPDAEVVS LSPKTLLESD  60
RYVCEICNQG FQRDQNLQMH RRRHKVPWKL LKRAETAEAV KKKVFVCPEL TCLHHDPRHA  120
LGDLVGIKKH FRRKHSNQKH WVCDKCSKAY AVHSDFKAHL KTCGTRGHSC DCGRVFSRVE  180
SFIEHQDACN LRQLRSDAPP PLLPPPLLQP YSRSISYTGA STSNDHSFQM ATPLRGFPIL  240
SSNLDRNINI NFPNHHDLEL HLSSPSSAFL KLSIGSNKEA KEERQLDLAI AEKAYAEEAR  300
REAKRQIEIA EVEFANAKMI RQQAQAELEK ARILKEEATR KMSSTIMEIT CQTCRLHFHM  360
SSVTPEETSL AISYMSSATT EGDGE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	38	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-130	C2H2 family protein