PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022955396.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 452aa MW: 50171.1 Da PI: 8.7892

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022955396.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.3e-05	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_022955396.1 78 FVCEICSKGFQRDQNLQLHKRGH 100 89******************988 PP
2	zf-C2H2	12.9	0.00033	155	177	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_022955396.1 155 WKCDKCSKRYAVQSDWKAHSKTC 177 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MNKGFASPME DTMSNLTSAS GEPSACSGNH SDHLPANYSG QYFSAPPPKK KRNLPGNPDP 60 DAEVVALSPK TLMATNRFVC EICSKGFQRD QNLQLHKRGH NLPWKLKQRA NKEVIRKKVY 120 VCPETNCVHH DPLRALGDLT GIKKHFCRKH GEKKWKCDKC SKRYAVQSDW KAHSKTCGTR 180 EYRCDCGTLF WRRDSFITHR AFCDALAEES ARAITTSNPN NNQNLPISSS ISHLNFQNPL 240 DINSFSLKKE HQQIPTTNNF NIPPWIGCPS SRSSPLQDHQ SLIMINNDQI MNPNNPLHLI 300 QSSSPSPHMS ATALLQKAAQ MGATMSNSNN NGNISSSSSS SRDNHHQILM AGSEGVGVSH 360 ALPLHTNKSN NYNDFEGACF ELERFGGGFE KDEIFRGRSD EGLSTRDFLG LRAISHTEFL 420 NNIAAVGYSN CINGGAPQTP RTQFHNQPGW QG

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MNKGFASPME DTMSNLTSAS GEPSACSGNH SDHLPANYSG QYFSAPPPKK KRNLPGNPDP  60
DAEVVALSPK TLMATNRFVC EICSKGFQRD QNLQLHKRGH NLPWKLKQRA NKEVIRKKVY  120
VCPETNCVHH DPLRALGDLT GIKKHFCRKH GEKKWKCDKC SKRYAVQSDW KAHSKTCGTR  180
EYRCDCGTLF WRRDSFITHR AFCDALAEES ARAITTSNPN NNQNLPISSS ISHLNFQNPL  240
DINSFSLKKE HQQIPTTNNF NIPPWIGCPS SRSSPLQDHQ SLIMINNDQI MNPNNPLHLI  300
QSSSPSPHMS ATALLQKAAQ MGATMSNSNN NGNISSSSSS SRDNHHQILM AGSEGVGVSH  360
ALPLHTNKSN NYNDFEGACF ELERFGGGFE KDEIFRGRSD EGLSTRDFLG LRAISHTEFL  420
NNIAAVGYSN CINGGAPQTP RTQFHNQPGW QG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	118	KLKQRANKEVIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-124	C2H2 family protein