PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022955274.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

SBP

Protein Properties

Length: 548aa MW: 60658.7 Da PI: 8.023

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022955274.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.3	3.9e-42	177	253	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv gC++dls+ k+yh+rh+vCevhsk+++v+v+g+eqrfCqqCsrfh lsefD++krsCr+rLa+hnerrrk+q XP_022955274.1 177 CQVYGCNKDLSSSKNYHKRHRVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLSEFDDGKRSCRKRLAGHNERRRKPQV 253 **************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MESWNYGSQG KGFLSDEMNS STNSLLKSKY SLLGWEFKNP CSFGDNILLS GGAQHVENQS 60 FGELEFPLMV GKQLPDDSFS DVLNTKIDGG RSLNLVLPTS HPLPGEEEST SKLSGSIVDS 120 NNRDSSLIDL KLGRFIDTGD AHSFKYSKRA AISSSTESST SYKKMRSQGV NFLTPFCQVY 180 GCNKDLSSSK NYHKRHRVCE VHSKTSKVIV NGIEQRFCQQ CSRFHLLSEF DDGKRSCRKR 240 LAGHNERRRK PQVSFHSGRA QRLLQPYNGN GDRRFQEKAL GATSFICKDI LSSDVYYPEK 300 LGKNDWRKRI KVEGKNDYNS MCATSVGDRL LNMKSPLLPY DFEVQIPCFQ GNGSNAAATE 360 NMLCDTSCQY SHNVGGLHMD THPLFHHTNL SSENFGVYDA ASTIQGVSGN PDYGCALSLL 420 SSHSQNASTH PSIVHVPRAF TMSESRSNYS MSELSEKLMG VSSQASSTGI SSKFASGMSE 480 AQMVPIMTGE SSDRSVTFQI TDGVLHRSGL GNAKANLSYE HTPTMDLLQL SSQLHRVEHQ 540 RHSMQDSV

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MESWNYGSQG KGFLSDEMNS STNSLLKSKY SLLGWEFKNP CSFGDNILLS GGAQHVENQS  60
FGELEFPLMV GKQLPDDSFS DVLNTKIDGG RSLNLVLPTS HPLPGEEEST SKLSGSIVDS  120
NNRDSSLIDL KLGRFIDTGD AHSFKYSKRA AISSSTESST SYKKMRSQGV NFLTPFCQVY  180
GCNKDLSSSK NYHKRHRVCE VHSKTSKVIV NGIEQRFCQQ CSRFHLLSEF DDGKRSCRKR  240
LAGHNERRRK PQVSFHSGRA QRLLQPYNGN GDRRFQEKAL GATSFICKDI LSSDVYYPEK  300
LGKNDWRKRI KVEGKNDYNS MCATSVGDRL LNMKSPLLPY DFEVQIPCFQ GNGSNAAATE  360
NMLCDTSCQY SHNVGGLHMD THPLFHHTNL SSENFGVYDA ASTIQGVSGN PDYGCALSLL  420
SSHSQNASTH PSIVHVPRAF TMSESRSNYS MSELSEKLMG VSSQASSTGI SSKFASGMSE  480
AQMVPIMTGE SSDRSVTFQI TDGVLHRSGL GNAKANLSYE HTPTMDLLQL SSQLHRVEHQ  540
RHSMQDSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	5e-50	SBP family protein