PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022955256.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 546aa MW: 59405.4 Da PI: 5.4892

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022955256.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.4e-11	362	404	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L XP_022955256.1 362 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 404 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MLSRVGSVGW MENREDEGSA SWTNNDTHNH LNHPAANCSV LDNKDQISSL STFKSMLEVE 60 DDWCIAANAL HNHNDINGIS FSQNFTDPPD NLLLPHGDSS SSCSPSSSVF NNIDPSQLQF 120 FLPPTRTLSS LYKVIGNNPL EHGFDFGAEV GFLDVQASNT SALLSSGGGL LTGFTDLSPT 180 SQMNSPNMCL GSQLTTPNLP QMTGNCSGLA GFQSLDENLG NALLLNRSKL LRPLESFPSV 240 GTQPTLFQKR AALRKSLADK GSNLGVLSPD GGWCSNRIEG GVGKNEVGDE NAKRKMIYAD 300 EMQETSIDTT RFNYDSDDFT ENNDTKLDES GRNVGSTSNA NSTVTGGDQK GKKKGLPAKN 360 LMAERRRRKK LNDRLYMLRS VVPKISKMDR ASILGDAIEY LKELLQRIND LHNELEFSPS 420 GTALTPSTSF HPLTPTPPTL SSRIKEELCP SSFPSPNGQP ARVEVRVREG RAVNIHMFCG 480 RRPGLLLSSV RALDNLGLDI QQAVISCFNG FAMDIFRAEQ CSEGQDVHPE QIKAILLDSV 540 GFNGSC

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MLSRVGSVGW MENREDEGSA SWTNNDTHNH LNHPAANCSV LDNKDQISSL STFKSMLEVE  60
DDWCIAANAL HNHNDINGIS FSQNFTDPPD NLLLPHGDSS SSCSPSSSVF NNIDPSQLQF  120
FLPPTRTLSS LYKVIGNNPL EHGFDFGAEV GFLDVQASNT SALLSSGGGL LTGFTDLSPT  180
SQMNSPNMCL GSQLTTPNLP QMTGNCSGLA GFQSLDENLG NALLLNRSKL LRPLESFPSV  240
GTQPTLFQKR AALRKSLADK GSNLGVLSPD GGWCSNRIEG GVGKNEVGDE NAKRKMIYAD  300
EMQETSIDTT RFNYDSDDFT ENNDTKLDES GRNVGSTSNA NSTVTGGDQK GKKKGLPAKN  360
LMAERRRRKK LNDRLYMLRS VVPKISKMDR ASILGDAIEY LKELLQRIND LHNELEFSPS  420
GTALTPSTSF HPLTPTPPTL SSRIKEELCP SSFPSPNGQP ARVEVRVREG RAVNIHMFCG  480
RRPGLLLSSV RALDNLGLDI QQAVISCFNG FAMDIFRAEQ CSEGQDVHPE QIKAILLDSV  540
GFNGSC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	352	370	KKKGLPAKNLMAERRRRKK
2	364	371	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-101	bHLH family protein