PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022955143.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 427aa MW: 47218.7 Da PI: 5.4204 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.6 | 7.5e-12 | 120 | 142 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C f++rtGtCk+G+ CkF+H+ XP_022955143.1 120 EDCAFYLRTGTCKFGSLCKFNHP 142 78********************9 PP | |||||||
2 | zf-CCCH | 21.3 | 4.6e-07 | 148 | 166 | 7 | 25 |
SGGGGTS--TTTTT-SS-S CS zf-CCCH 7 rffartGtCkyGdrCkFaH 25 ++++rtG Ck+G C+++H XP_022955143.1 148 QYYSRTGGCKFGTACRYNH 166 59***************** PP | |||||||
3 | zf-CCCH | 34.2 | 4.3e-11 | 191 | 213 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG CkyG++CkF+H+ XP_022955143.1 191 KECPYYMRTGCCKYGANCKFNHP 213 68********************9 PP | |||||||
4 | zf-CCCH | 19.4 | 1.8e-06 | 315 | 341 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ + C ++H++ XP_022955143.1 315 PGQPECSYFLKTGDCKFKSLCIYHHPK 341 5789*********************96 PP | |||||||
5 | zf-CCCH | 36 | 1.1e-11 | 363 | 387 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C +++r+G+Ck+G++CkF H++ XP_022955143.1 363 QNVCTYYSRYGICKFGPSCKFDHPM 387 568********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence |
MEPSEAVFVP IHCESLPSGS QSLQFHGSVH DPALFDASHV ADDDRIHAEL QKLDLKDEKE 60 AAVKDFDGGG EWEVEKNPVE GEGNLEEEVV VVDAGDGGEV EKEGEMRGGN NQYPVRSEAE 120 DCAFYLRTGT CKFGSLCKFN HPLRKRHQYY SRTGGCKFGT ACRYNHTRPR ALPNPILELN 180 FLGLPIRLNE KECPYYMRTG CCKYGANCKF NHPDPTTVAV PESLSGYNNG VLLQGGASQS 240 QITSWTSPRV LNETPTFVPA MISPSQDSEW NAYQAPMYPS EISMLPPPTY AVNNIASGTD 300 LYPSHQQVEE HPERPGQPEC SYFLKTGDCK FKSLCIYHHP KNWNLKLPTC TLNDKGLPLR 360 PDQNVCTYYS RYGICKFGPS CKFDHPMLPA SSTSELKQQP HYSNFNAAEG AEMGGGSGNG 420 VTVEQSA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-112 | C3H family protein |