PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022955142.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 449aa MW: 49691.4 Da PI: 5.4375

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022955142.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.5	8e-12	120	142	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C f++rtGtCk+G+ CkF+H+ XP_022955142.1 120 EDCAFYLRTGTCKFGSLCKFNHP 142 78********************9 PP
2	zf-CCCH	28.6	2.5e-09	168	188	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++++rtG Ck+G C+++H XP_022955142.1 168 ECKYYSRTGGCKFGTACRYNH 188 8******************** PP
3	zf-CCCH	34.1	4.6e-11	213	235	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG CkyG++CkF+H+ XP_022955142.1 213 KECPYYMRTGCCKYGANCKFNHP 235 68********************9 PP
4	zf-CCCH	19.3	2e-06	337	363	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ + C ++H++ XP_022955142.1 337 PGQPECSYFLKTGDCKFKSLCIYHHPK 363 5789*********************96 PP
5	zf-CCCH	36	1.2e-11	385	409	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C +++r+G+Ck+G++CkF H++ XP_022955142.1 385 QNVCTYYSRYGICKFGPSCKFDHPM 409 568********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MEPSEAVFVP IHCESLPSGS QSLQFHGSVH DPALFDASHV ADDDRIHAEL QKLDLKDEKE 60 AAVKDFDGGG EWEVEKNPVE GEGNLEEEVV VVDAGDGGEV EKEGEMRGGN NQYPVRSEAE 120 DCAFYLRTGT CKFGSLCKFN HPLRKRHQVV SEKLKHENDS AEQTSKTECK YYSRTGGCKF 180 GTACRYNHTR PRALPNPILE LNFLGLPIRL NEKECPYYMR TGCCKYGANC KFNHPDPTTV 240 AVPESLSGYN NGVLLQGGAS QSQITSWTSP RVLNETPTFV PAMISPSQDS EWNAYQAPMY 300 PSEISMLPPP TYAVNNIASG TDLYPSHQQV EEHPERPGQP ECSYFLKTGD CKFKSLCIYH 360 HPKNWNLKLP TCTLNDKGLP LRPDQNVCTY YSRYGICKFG PSCKFDHPML PASSTSELKQ 420 QPHYSNFNAA EGAEMGGGSG NGVTVEQSA

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MEPSEAVFVP IHCESLPSGS QSLQFHGSVH DPALFDASHV ADDDRIHAEL QKLDLKDEKE  60
AAVKDFDGGG EWEVEKNPVE GEGNLEEEVV VVDAGDGGEV EKEGEMRGGN NQYPVRSEAE  120
DCAFYLRTGT CKFGSLCKFN HPLRKRHQVV SEKLKHENDS AEQTSKTECK YYSRTGGCKF  180
GTACRYNHTR PRALPNPILE LNFLGLPIRL NEKECPYYMR TGCCKYGANC KFNHPDPTTV  240
AVPESLSGYN NGVLLQGGAS QSQITSWTSP RVLNETPTFV PAMISPSQDS EWNAYQAPMY  300
PSEISMLPPP TYAVNNIASG TDLYPSHQQV EEHPERPGQP ECSYFLKTGD CKFKSLCIYH  360
HPKNWNLKLP TCTLNDKGLP LRPDQNVCTY YSRYGICKFG PSCKFDHPML PASSTSELKQ  420
QPHYSNFNAA EGAEMGGGSG NGVTVEQSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-120	C3H family protein