PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022954724.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 393aa MW: 44676.6 Da PI: 9.4604

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022954724.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	52	74	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_022954724.1 52 YVCEICHQGFQRDQNLQMHRRRH 74 9*********************9 PP
2	zf-C2H2	16.3	2.8e-05	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ XP_022954724.1 133 WVCEKCSKGYAVQSDYKAHLKTC 155 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MVADLSSLDP LSNCFHTNGT NSKRKRRPAG TPDPDAEVVS LSPKTLLESD SYVCEICHQG 60 FQRDQNLQMH RRRHKVPWKL LKRTETTTTT TTRKRVFVCP EPSCLHHNPT HALGDLVGIK 120 KHFRRKHSNH KQWVCEKCSK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDS 180 CKLGHHQQPE KEASLQPPPP PPPCLSRTAS SPTPTPSSDT NFSFLNQTHT PKTPQKLITH 240 HQNLDLQLST SSNSIKVSVS PKKHEIYSTH LQLSIGSCNY GDKNEQKDHY QMNFDEQIGN 300 GLNLLKLKEE AIERMRVARE EKAVAEEARN EAKKQIELAE KELANAKRMR QQAQAELQRA 360 LALKEHAINK INSTILQITC QVCRQHFHPL HKT

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MVADLSSLDP LSNCFHTNGT NSKRKRRPAG TPDPDAEVVS LSPKTLLESD SYVCEICHQG  60
FQRDQNLQMH RRRHKVPWKL LKRTETTTTT TTRKRVFVCP EPSCLHHNPT HALGDLVGIK  120
KHFRRKHSNH KQWVCEKCSK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDS  180
CKLGHHQQPE KEASLQPPPP PPPCLSRTAS SPTPTPSSDT NFSFLNQTHT PKTPQKLITH  240
HQNLDLQLST SSNSIKVSVS PKKHEIYSTH LQLSIGSCNY GDKNEQKDHY QMNFDEQIGN  300
GLNLLKLKEE AIERMRVARE EKAVAEEARN EAKKQIELAE KELANAKRMR QQAQAELQRA  360
LALKEHAINK INSTILQITC QVCRQHFHPL HKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	23	28	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-105	C2H2 family protein