PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022954034.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C2H2

Protein Properties

Length: 501aa MW: 54645.2 Da PI: 8.9114

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022954034.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	91	113	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_022954034.1 91 FVCEICNKGFQRDQNLQLHRRGH 113 89*******************88 PP
2	zf-C2H2	11.2	0.0011	168	190	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + XP_022954034.1 168 WKCDKCSKKYAVQSDWKAHSKIC 190 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence
MMMKGNFLSQ QQQQHQHQVL MDENLSNLTS ASGEATASVS SANHYFAPQS QHPPPPPPPP 60 PKKKRNLPGN PDPDAEVIAL SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK 120 QRSNKEVVKK KVYVCPESSC VHHDPSRALG DLTGIKKHFY RKHGEKKWKC DKCSKKYAVQ 180 SDWKAHSKIC GTKEYRCDCG TLFSRRDSFI THRAFCDALA DESARSAMAL NPLISSYNNN 240 NNNNNFVIKR DFSNGNNMRA EIPPWLHSND LRGEIFIGSC QDEHPHQNHE TLNPNRHGHG 300 HGHGHGHGCG ASIGLPPPSS YQCSSVSSPH ISATALLQKA AQMGATMSST TTTSGSMQRP 360 HKMVHVSTGD YGQIGGGAVS CSSSCTDYGH KAAAVSASEP ATFLHDMINS LSSASASHPF 420 LQDSSFNDVT AFPAMHHHIV PATATTTVTA ASGGRSDGLT RDFLGLRPLS HGDILSLTGF 480 GNCIVPNSSN LQSQIQKPWQ G

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence

MMMKGNFLSQ QQQQHQHQVL MDENLSNLTS ASGEATASVS SANHYFAPQS QHPPPPPPPP  60
PKKKRNLPGN PDPDAEVIAL SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK  120
QRSNKEVVKK KVYVCPESSC VHHDPSRALG DLTGIKKHFY RKHGEKKWKC DKCSKKYAVQ  180
SDWKAHSKIC GTKEYRCDCG TLFSRRDSFI THRAFCDALA DESARSAMAL NPLISSYNNN  240
NNNNNFVIKR DFSNGNNMRA EIPPWLHSND LRGEIFIGSC QDEHPHQNHE TLNPNRHGHG  300
HGHGHGHGCG ASIGLPPPSS YQCSSVSSPH ISATALLQKA AQMGATMSST TTTSGSMQRP  360
HKMVHVSTGD YGQIGGGAVS CSSSCTDYGH KAAAVSASEP ATFLHDMINS LSSASASHPF  420
LQDSSFNDVT AFPAMHHHIV PATATTTVTA ASGGRSDGLT RDFLGLRPLS HGDILSLTGF  480
GNCIVPNSSN LQSQIQKPWQ G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-104	C2H2 family protein