PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022953121.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 610aa MW: 68517.5 Da PI: 4.6819

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022953121.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38	2.9e-12	356	399	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ +Lr l+Pk + K++Ka+iL A++++k+Lq XP_022953121.1 356 VAERKRRKKLNERLYNLRALVPKiS------KMDKASILGDAIDFVKELQ 399 68*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence
MQSLMERLRP LVGSKSWDYC VLWKLSQDQR CVEWMDCCCA GTENGQNGGE ELGFPVSQVI 60 PCRDTAYPHP RASSCDLLAQ LPCSVPLNSG VYIQTLLSNE PKWLLFSNAM DSTALDETAG 120 TRVLIPFPFG LVELFVAKHA SEDQHVIDFV TIQCSISVEQ EAIINSSNMD TSFSVDVNAT 180 NEIQSKPFVA DRNAVLKDPE IQFEAPGSAA PTLENANVGY DISLDRIRLC SSPMNFLQQF 240 NYSSENRNKN EIFNECSQDS FLTDKQGNPY KFSAENEFQE VDTMQGSLMN TSNIHVQLKE 300 NSECKEQQGE EKDLVKHENG RSDSISDCSD QIDDEDDAIA KYRRRTGQGP QSKNLVAERK 360 RRKKLNERLY NLRALVPKIS KMDKASILGD AIDFVKELQK QVKELQDELE EHTDDENGKT 420 VVSGNNGNQN SVQLPEFLSQ NDKAQNNYHM GVLGSGSVLK QNHQDTEGTN NDKTQQMEPQ 480 VEVAQIDGNE FFVKVFCENK RGGFMRLMEA LNALGLEVTN ANVTSYRGLV SNVFKVGKKD 540 SEMVQADDVR DSLLEITKYP CRGWAEIVKA PECIGSRMEP NPHPHPHQHQ TQNPFQDKAI 600 INSRLHLLND

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence

MQSLMERLRP LVGSKSWDYC VLWKLSQDQR CVEWMDCCCA GTENGQNGGE ELGFPVSQVI  60
PCRDTAYPHP RASSCDLLAQ LPCSVPLNSG VYIQTLLSNE PKWLLFSNAM DSTALDETAG  120
TRVLIPFPFG LVELFVAKHA SEDQHVIDFV TIQCSISVEQ EAIINSSNMD TSFSVDVNAT  180
NEIQSKPFVA DRNAVLKDPE IQFEAPGSAA PTLENANVGY DISLDRIRLC SSPMNFLQQF  240
NYSSENRNKN EIFNECSQDS FLTDKQGNPY KFSAENEFQE VDTMQGSLMN TSNIHVQLKE  300
NSECKEQQGE EKDLVKHENG RSDSISDCSD QIDDEDDAIA KYRRRTGQGP QSKNLVAERK  360
RRKKLNERLY NLRALVPKIS KMDKASILGD AIDFVKELQK QVKELQDELE EHTDDENGKT  420
VVSGNNGNQN SVQLPEFLSQ NDKAQNNYHM GVLGSGSVLK QNHQDTEGTN NDKTQQMEPQ  480
VEVAQIDGNE FFVKVFCENK RGGFMRLMEA LNALGLEVTN ANVTSYRGLV SNVFKVGKKD  540
SEMVQADDVR DSLLEITKYP CRGWAEIVKA PECIGSRMEP NPHPHPHQHQ TQNPFQDKAI  600
INSRLHLLND

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	343	364	RRRTGQGPQSKNLVAERKRRKK
2	358	365	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-125	bHLH family protein