PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022952580.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 506aa MW: 55596.7 Da PI: 7.9701

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022952580.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.5	7.2e-11	149	173	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ XP_022952580.1 149 GEKDCAHYMLTRTCKFGDSCKFDHP 173 7889********************8 PP
2	zf-CCCH	36	1.2e-11	201	226	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++f++t Ck+G+rCkF+H++ XP_022952580.1 201 GEPDCPYFLKTQRCKFGSRCKFNHPK 226 5799********************96 PP
3	zf-CCCH	29.5	1.3e-09	248	272	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC f+ +tG Ck+ +CkF+H++ XP_022952580.1 248 EPLCAFYVKTGNCKFRVNCKFHHPK 272 79*********************96 PP
4	zf-CCCH	36.9	6e-12	325	350	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG +C+++H+ XP_022952580.1 325 PGEVDCPFYLKTGSCKYGTTCRYNHP 350 57899********************9 PP
5	zf-CCCH	41	3.2e-13	405	428	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+++++tG Ck+G+rCkF+H+ XP_022952580.1 405 QIECDYYMKTGDCKFGERCKFHHP 428 568********************8 PP
6	zf-CCCH	40.5	4.6e-13	457	479	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+++++tGtCkyG++CkF H+p XP_022952580.1 457 ICPYYLKTGTCKYGSTCKFDHPP 479 6********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence
MANQLHGYSS VYGAGPATST ATATATATAT TPLPAVYSSS RSLSDIVSGR YLVSDSLASG 60 LSIKHSFIDR GTTMYSTQNE ALRLSAADIV PRTSHSVSQR SSDVLYDQTV LGSYNTLGQS 120 EAWYTSNSLA KRPRFESTSN LHVYPQRPGE KDCAHYMLTR TCKFGDSCKF DHPIWVPDGG 180 IPDWKEVPQI TSSEDLPERL GEPDCPYFLK TQRCKFGSRC KFNHPKDTSE SVGAEKSDVS 240 SLPERPSEPL CAFYVKTGNC KFRVNCKFHH PKDIQILSGE VNGNSEQTLM EANTEGRIGD 300 FKLVKPPVSF SPALIHNSKG LPIRPGEVDC PFYLKTGSCK YGTTCRYNHP DRNAINPSTP 360 AMVSAANMNI GISNPSNAIY QAVDPRLIQP LLGSSSSIYP RRPGQIECDY YMKTGDCKFG 420 ERCKFHHPID RSAPMQASQH NVKLTLAGLP RREDAIICPY YLKTGTCKYG STCKFDHPPP 480 GEVMAMVAVQ LVPGKEGEER IDEPTS

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence

MANQLHGYSS VYGAGPATST ATATATATAT TPLPAVYSSS RSLSDIVSGR YLVSDSLASG  60
LSIKHSFIDR GTTMYSTQNE ALRLSAADIV PRTSHSVSQR SSDVLYDQTV LGSYNTLGQS  120
EAWYTSNSLA KRPRFESTSN LHVYPQRPGE KDCAHYMLTR TCKFGDSCKF DHPIWVPDGG  180
IPDWKEVPQI TSSEDLPERL GEPDCPYFLK TQRCKFGSRC KFNHPKDTSE SVGAEKSDVS  240
SLPERPSEPL CAFYVKTGNC KFRVNCKFHH PKDIQILSGE VNGNSEQTLM EANTEGRIGD  300
FKLVKPPVSF SPALIHNSKG LPIRPGEVDC PFYLKTGSCK YGTTCRYNHP DRNAINPSTP  360
AMVSAANMNI GISNPSNAIY QAVDPRLIQP LLGSSSSIYP RRPGQIECDY YMKTGDCKFG  420
ERCKFHHPID RSAPMQASQH NVKLTLAGLP RREDAIICPY YLKTGTCKYG STCKFDHPPP  480
GEVMAMVAVQ LVPGKEGEER IDEPTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein