PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022952579.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 526aa MW: 57586.8 Da PI: 7.7292

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022952579.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.4	7.6e-11	169	193	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ XP_022952579.1 169 GEKDCAHYMLTRTCKFGDSCKFDHP 193 7889********************8 PP
2	zf-CCCH	36	1.2e-11	221	246	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++f++t Ck+G+rCkF+H++ XP_022952579.1 221 GEPDCPYFLKTQRCKFGSRCKFNHPK 246 5799********************96 PP
3	zf-CCCH	29.5	1.3e-09	268	292	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC f+ +tG Ck+ +CkF+H++ XP_022952579.1 268 EPLCAFYVKTGNCKFRVNCKFHHPK 292 79*********************96 PP
4	zf-CCCH	36.9	6.3e-12	345	370	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG +C+++H+ XP_022952579.1 345 PGEVDCPFYLKTGSCKYGTTCRYNHP 370 57899********************9 PP
5	zf-CCCH	40.9	3.3e-13	425	448	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+++++tG Ck+G+rCkF+H+ XP_022952579.1 425 QIECDYYMKTGDCKFGERCKFHHP 448 568********************8 PP
6	zf-CCCH	40.4	4.8e-13	477	499	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+++++tGtCkyG++CkF H+p XP_022952579.1 477 ICPYYLKTGTCKYGSTCKFDHPP 499 6********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MANQLHGYSS VYGAGPATST ATATATATAT TPLPAVYSSS RSLSDIVSGR YLVSDSLASG 60 LSIKHSFIDR GTTMYSTQNE ALRLSAADIV PRTSHSVSQF SWPGSDAATA LDSVVSGIQR 120 SSDVLYDQTV LGSYNTLGQS EAWYTSNSLA KRPRFESTSN LHVYPQRPGE KDCAHYMLTR 180 TCKFGDSCKF DHPIWVPDGG IPDWKEVPQI TSSEDLPERL GEPDCPYFLK TQRCKFGSRC 240 KFNHPKDTSE SVGAEKSDVS SLPERPSEPL CAFYVKTGNC KFRVNCKFHH PKDIQILSGE 300 VNGNSEQTLM EANTEGRIGD FKLVKPPVSF SPALIHNSKG LPIRPGEVDC PFYLKTGSCK 360 YGTTCRYNHP DRNAINPSTP AMVSAANMNI GISNPSNAIY QAVDPRLIQP LLGSSSSIYP 420 RRPGQIECDY YMKTGDCKFG ERCKFHHPID RSAPMQASQH NVKLTLAGLP RREDAIICPY 480 YLKTGTCKYG STCKFDHPPP GEVMAMVAVQ LVPGKEGEER IDEPTS

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MANQLHGYSS VYGAGPATST ATATATATAT TPLPAVYSSS RSLSDIVSGR YLVSDSLASG  60
LSIKHSFIDR GTTMYSTQNE ALRLSAADIV PRTSHSVSQF SWPGSDAATA LDSVVSGIQR  120
SSDVLYDQTV LGSYNTLGQS EAWYTSNSLA KRPRFESTSN LHVYPQRPGE KDCAHYMLTR  180
TCKFGDSCKF DHPIWVPDGG IPDWKEVPQI TSSEDLPERL GEPDCPYFLK TQRCKFGSRC  240
KFNHPKDTSE SVGAEKSDVS SLPERPSEPL CAFYVKTGNC KFRVNCKFHH PKDIQILSGE  300
VNGNSEQTLM EANTEGRIGD FKLVKPPVSF SPALIHNSKG LPIRPGEVDC PFYLKTGSCK  360
YGTTCRYNHP DRNAINPSTP AMVSAANMNI GISNPSNAIY QAVDPRLIQP LLGSSSSIYP  420
RRPGQIECDY YMKTGDCKFG ERCKFHHPID RSAPMQASQH NVKLTLAGLP RREDAIICPY  480
YLKTGTCKYG STCKFDHPPP GEVMAMVAVQ LVPGKEGEER IDEPTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein