PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022952506.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family GRAS
Protein Properties Length: 421aa    MW: 47226.9 Da    PI: 5.6457
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022952506.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS301.12.6e-92444142373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPilkf 93 
                     ++lLl+cA a++s+d +laq++++ l++ asp gdp+qRl+  f++AL +r +r +++   +    + ++ + +++l++++    ++++ P+++f
  XP_022952506.1  44 EKLLLHCAGALESHDVTLAQQVMWVLNNVASPVGDPNQRLTCWFLRALISRASRVCPTPTPTPMNFNGRSARIDTRLMSVTElarYVDLIPWYRF 138
                     689***************************************************7776665554444444455555555444489********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakr 185
                     ++ +aN aI++a++++ +vHi+Df+is+++QWp+L++aL++Rp+gppslRi + +   s+    + +++++g  L+kfA++ ++pf+fnv + ++
  XP_022952506.1 139 GFCAANIAIYKAIQRCPKVHILDFSISHCMQWPTLIDALSKRPQGPPSLRISVPSFRPSVpplLNISTQQIGLCLSKFANSKNIPFQFNV-IDNH 232
                     ****************************************************99886666889999***********************9.6999 PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      +++++++L+++++Eal++n+++ l ++l+++ +     d+++++ ksl+P+++vvv++++d++++s++ r++ +++y++  fd+le+ lp++s 
  XP_022952506.1 233 NTSIDPSSLSLEEDEALVINCQHWLRYMLNDEEE----EDDFINATKSLNPRIMVVVDEDSDMSDSSLASRITTCFNYFWIPFDALETFLPKDSA 323
                     999*************************955444....567****************************************************** PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +r  +E+  +g++i+n++  eg++r+er e+  k +er+++ G+ +vp+ ++++++ k+ll++ +  g+ ++ e+++lvl+Wk+++ v+v+aW
  XP_022952506.1 324 QRLEYEAD-IGQRIQNIIGFEGQQRVERLESCVKVSERMRNGGYLNVPFCDDVEAELKALLAEQA-SGWGMKREEDTLVLTWKGHNSVFVTAW 414
                     ********.******************************************************99.88999999******************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    
MRAELKGKTS SISVHNSTIL NTPHTSLSGA LKGCLGSLDG GCIEKLLLHC AGALESHDVT  60
LAQQVMWVLN NVASPVGDPN QRLTCWFLRA LISRASRVCP TPTPTPMNFN GRSARIDTRL  120
MSVTELARYV DLIPWYRFGF CAANIAIYKA IQRCPKVHIL DFSISHCMQW PTLIDALSKR  180
PQGPPSLRIS VPSFRPSVPP LLNISTQQIG LCLSKFANSK NIPFQFNVID NHNTSIDPSS  240
LSLEEDEALV INCQHWLRYM LNDEEEEDDF INATKSLNPR IMVVVDEDSD MSDSSLASRI  300
TTCFNYFWIP FDALETFLPK DSAQRLEYEA DIGQRIQNII GFEGQQRVER LESCVKVSER  360
MRNGGYLNVP FCDDVEAELK ALLAEQASGW GMKREEDTLV LTWKGHNSVF VTAWVTDELA  420
R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-101GRAS family protein