PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022952135.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family C3H
Protein Properties Length: 434aa    MW: 49150.1 Da    PI: 7.5937
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022952135.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.8e-06831126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    +kt+lC  +++ G+C++ ++C+FaHg
  XP_022952135.1  8 FKTKLCVLYQK-GHCSR-PSCSFAHG 31
                    69*********.*****.*******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    
MMIGRKLFKT KLCVLYQKGH CSRPSCSFAH GNAELRRFAG ASSGRQEYRE NDLRHKLDNR  60
HSPLQERDSR GRHGPQYSSS WSLERNSDHK RRKKDHGDSR TDYAGNLRIT DRSEERDREG  120
KISSSSRDTL EGQLNKMQAD IEMAEHHRHQ AEVYLDEKIQ EVDSLTSRIQ ELESQLYNER  180
EECRRIKSKI KKFVKAHNRY SGIQDELKRS QFRLQQLGDQ LGSDVNKIGA NEEDSSVNIV  240
SDGEDPGYHA AGPLHHLHKD TSASKRKLHV DQDIAGNSKR ADLHKGSKEA VGRLRRISRW  300
NAHPAKSMYS KIEAVRNENN DYIPKANESR QKRGKASNSV STADKVRSLD AGVVVPLTSM  360
AAHAVNEEVD IELEVNNEVS DRRESTKEAA SGSAPLLPPP QSPIHEINHS RYEGEDQNID  420
VEVVDDESAG LDDA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.12e-55C3H family protein