PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022952134.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family C3H
Protein Properties Length: 435aa    MW: 49307.3 Da    PI: 7.5938
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022952134.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.8e-06831126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    +kt+lC  +++ G+C++ ++C+FaHg
  XP_022952134.1  8 FKTKLCVLYQK-GHCSR-PSCSFAHG 31
                    69*********.*****.*******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    
MMIGRKLFKT KLCVLYQKGH CSRPSCSFAH GNAELRRFAG ASSGRQEYRE NDLRHKLDNR  60
HSPLQERDSR GRHGPREYSS SWSLERNSDH KRRKKDHGDS RTDYAGNLRI TDRSEERDRE  120
GKISSSSRDT LEGQLNKMQA DIEMAEHHRH QAEVYLDEKI QEVDSLTSRI QELESQLYNE  180
REECRRIKSK IKKFVKAHNR YSGIQDELKR SQFRLQQLGD QLGSDVNKIG ANEEDSSVNI  240
VSDGEDPGYH AAGPLHHLHK DTSASKRKLH VDQDIAGNSK RADLHKGSKE AVGRLRRISR  300
WNAHPAKSMY SKIEAVRNEN NDYIPKANES RQKRGKASNS VSTADKVRSL DAGVVVPLTS  360
MAAHAVNEEV DIELEVNNEV SDRRESTKEA ASGSAPLLPP PQSPIHEINH SRYEGEDQNI  420
DVEVVDDESA GLDDA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-54C3H family protein