PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022952114.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family C3H
Protein Properties Length: 359aa    MW: 39671.3 Da    PI: 6.6497
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022952114.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.1e-06115135526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f+r G C +Gd C FaHg
  XP_022952114.1 115 MCPDFRR-GGCDRGDGCEFAHG 135
                     6******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    
MSSVCAEEQK FQFQFQLPPS CSSIIEDING EMCSDSPRFS FAVESLLQKF LPFNGEDVAE  60
EDGDPYSSDH FRMYEFKVWR CTRSRSHDWT DCPFAHPGEK ARRRDPRRFH YSGTMCPDFR  120
RGGCDRGDGC EFAHGVFECW LHPARYRTEA CKDGKNCKRK VCFFAHSPRE LRLLPPVSNF  180
QGGSCSSPNK RSSTLRSAAA GSNHGCLFCH CGGAATSSPT STLIGMSHLS PPLSPPLSPV  240
KPQSLNGFSP FSRYNPDPSK LNGVISYKDS MTELMNSIES MNIDELNATL AASASRQRIP  300
WIDVSSLNTE DQLQFVLSPS TPNGSAASVN FSVNNKGNAD NGWASASDPD LGWVNDLLM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.13e-74C3H family protein